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77 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			FA
GSE118118	A combination of transcription factors mediates inducible interchromosomal contacts	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces uvarum synthetic construct	123	BED BEDGRAPH FA GFF TXT SRA Run Selector	Seungsoo Kim	Aug 05, 2018
GSE124427	A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Daphnia pulex	31	FA GFF NARROWPEAK TXT SRA Run Selector	Jouni Antero Kvist	Oct 18, 2019
GSE249469	A fluorescent assay for cryptic transcription in Saccharomyces cerevisiae [MNase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	FA WIG	LeAnn Howe	Dec 06, 2023
GSE159871	A gain-of-function single nucleotide variant creates a new promoter which acts as an orientation-dependent enhancer-blocker (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	28	BW FA SRA Run Selector	Yavor Bozhilov	Mar 25, 2021
GSE112072	A genome-wide assessment of the ancestral neural crest gene regulatory network	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Lampetra planeri Petromyzon marinus	28	BED FA GTF TXT SRA Run Selector	Tatjana Sauka-Spengler	Mar 30, 2019
GSE21978	A global network of transcription factors, involving E2A, EBF1 and FOXO1, that orchestrates the B cell fate	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BED FA TXT SRA Run Selector	Christopher Benner	Jun 13, 2010
GSE199946	A histone deacetylase network regulates epigenetic reprogramming and viral silencing in HIV infected cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	45	BW FA FASTA GTF	Jeremy Simon	Aug 08, 2023
GSE68737	A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies	Other Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio	74	BEDGRAPH BW FA SRA Run Selector	Juan J. Tena	Dec 16, 2015
GSE30992	An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Homo sapiens synthetic construct	16	BOWTIE FA TXT	Xinchen Wang	Sep 15, 2011
GSE31006	An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	FA SRA Run Selector	Xinchen Wang	Sep 15, 2011
GSE48660	An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	5	FA SRA Run Selector	Jinke Wang	May 05, 2014
GSE69839	CENP-T and CENP-C bridge adjacent CENP-A nucleosomes on young alpha-satellite dimers	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	30	BED FA SRA Run Selector	Jorja Henikoff	May 24, 2016
GSE100643	Centromeres license the mitotic condensation of yeast chromosome arms	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	51	BED BW FA GTF TXT SRA Run Selector	Pierre Chymkowitch	Oct 11, 2018
GSE122479	ChIP-seq identified the regulation of genes by the quorum-sensing regulator OpaR in Vibrio parahaemolyticus	Genome binding/occupancy profiling by high throughput sequencing	Vibrio parahaemolyticus	4	FA WIG SRA Run Selector	San-Chi Chang	Oct 27, 2020
GSE220696	Chromatin plasticity contributes to neuronal selection during memory allocation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	CSV FA GTF MTX TSV	Johannes Gräff	Jul 26, 2024
GSE161217	Comparative analyses of gibbon centromeres reveal dynamic species-specific shifts in repeat composition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Hoolock leuconedys Hylobates moloch Nomascus leucogenys Symphalangus syndactylus	26	FA TXT	Mariam Okhovat	May 24, 2021
GSE161308	Comparative analyses of gibbon centromeres reveal dynamic species-specific shifts in repeat composition [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Hoolock leuconedys Hylobates moloch Nomascus leucogenys Symphalangus syndactylus	22	FA TXT XLSX	Mariam Okhovat	May 24, 2021
GSE121541	Contrasting roles of transcription factors spineless and EcR in the highly dynamic chromatin landscape of butterfly wing metamorphosis	Genome binding/occupancy profiling by high throughput sequencing	Junonia coenia	24	BW FA TXT SRA Run Selector	Karin Revka Loek van der Burg	Apr 30, 2019
GSE168182	Dynamics of synthetic yeast chromosome evolution shaped by hierarchical chromatin structures	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	4	BW FA HDF5 SRA Run Selector	Zhou Sijie	Jun 10, 2022
GSE213881	Effect of Smc and interaction with ParA on ParB binding to DNA in Pseudomonas aeruginosa	Genome binding/occupancy profiling by high throughput sequencing	Pseudomonas aeruginosa	11	BED BIGWIG FA	Adam Kawałek	Dec 17, 2022