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1228 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			CSV
GSE214264	3D genome structures of single differentiating mouse ES cells reveal a unique reorganisation of chromatin in the formative state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	101	BROADPEAK BW CSV NARROWPEAK NCC TSV TXT	David Lando	Jan 19, 2024
GSE199801	A CpG island-encoded mechanism protects genes from premature transcription termination [SET1_ChIPseq]	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	60	BED BW CSV	Emilia Dimitrova	Dec 22, 2022
GSE193743	A High-Resolution Route Map Reveals Distinct Stages of Chondrocyte Dedifferentiation (ATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	CSV	Yishan Chen	Jan 20, 2022
GSE173588	A MYT1L Syndrome mouse model recapitulates patient phenotypes and reveals altered brain development due to disrupted neuronal maturation [ATAC-Seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	29	CSV SRA Run Selector	Joseph Dougherty	Sep 22, 2021
GSE161018	A Machine-learning approach to define and predict the therapeutic landscape of pan-cancer Hippo pathway dependency (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	CSV SRA Run Selector	Robert Piskol	Jan 26, 2021
GSE185106	A Mitofusin2-Hif1alpha axis regulates the neonatal-to-adult transition in regenerating muscle	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BW CSV	Prashant Mishra	Aug 16, 2022
GSE104690	A Non-canonical BCOR-PRC1.1 Complex Represses Differentiation Programs in Human ESCs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	42	BIGWIG BROADPEAK CSV SRA Run Selector	Micah Gearhart	Jan 11, 2018
GSE216840	A Novel mode of half site binding in budding yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	26	CSV TXT	Pamela Recio	Nov 04, 2022
GSE216839	A Novel mode of half site binding in budding yeast II	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	10	CSV	Pamela Recio	Nov 04, 2022
GSE216481	A Transcription Factor Atlas of Directed Differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Homo sapiens Lentivirus	281	CSV MTX TSV	Julia Joung	Jan 05, 2023
GSE217215	A Transcription Factor Atlas of Directed Differentiation [SHAREseq_201218_ATAC]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	36	CSV H5AD RDS TSV SRA Run Selector	Julia Joung	Jan 05, 2023
GSE217066	A Transcription Factor Atlas of Directed Differentiation [SHAREseq_210715_combinatorial]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	CSV H5AD	Julia Joung	Jan 05, 2023
GSE155882	A Transcriptional Switch Governs Fibroblast Activation in Heart Disease	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Mus musculus	56	BED BIGWIG BW CSV MTX TSV WIG SRA Run Selector	Pawel Przytycki	Apr 08, 2021
GSE225809	A Unified Framework for Systematic Identification of Post-Transcriptional Regulatory Modules	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	21	CSV MTX TSV	Hani Goodarzi	Feb 21, 2024
GSE202802	A VEL3 histone deacetylase complex establishes a maternal epigenetic state controlling progeny seed dormancy	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	38	BW CSV	Xiaochao Chen	Mar 16, 2023
GSE232200	A cell type specific error correction signal in posterior parietal cortex	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV SNAP	Christopher Harvey	May 11, 2023
GSE115047	A chromatin integration labeling method enables lower-input epigenomic profiling	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	189	BED BW CSV NARROWPEAK SRA Run Selector	Yasuyuki Ohkawa	Oct 09, 2018
GSE188405	A cis-regulatory lexicon of DNA motif combinations mediating cell type-specific gene regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens synthetic construct	90	BED CSV TXT	Margaret Guo	Aug 17, 2022
GSE188401	A cis-regulatory lexicon of DNA motif combinations mediating cell type-specific gene regulation [HiChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	CSV SRA Run Selector	Margaret Guo	Aug 17, 2022
GSE59419	A comparison of control samples for ChIP-seq of histone modifications	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	CSV SRA Run Selector	Marnie Blewitt	Jan 01, 2015