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1213 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			CSV
GSE33838	DUX4 activates germline genes, retroelements and immune-mediators: Implications for facioscapulohumeral dystrophy	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BAI BAM BEDGRAPH CSV SRA Run Selector	Stephen Tapscott	Jan 03, 2012
GSE199739	NuRD complex recruitment to Thpok mediates CD4+ T cell lineage differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BAI CSV H5 TBI TSV	Remy Bosselut	Jun 10, 2022
GSE212109	Epigenetic regulation of profibrotic macrophages in systemic sclerosis- associated interstitial lung disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	17	BAI BED CSV H5 TBI TSV	Tracy Tabib	Sep 02, 2022
GSE30558	Bisulphite-sequencing of chromatin immunoprecipitated DNA (BisChiP-seq) directly informs methylation status	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	2	BAM BED CSV WIG SRA Run Selector	Mark Robinson	Jan 18, 2012
GSE81436	The ortholog of DDM1 is mainly required for CHG and CG methylation of heterochromatin and is involved in DRM2-mediated CHH methylation that targets mostly genic regions of the rice genome	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Oryza sativa Japonica Group	17	BAM BW CSV GFF WIG XLS SRA Run Selector	chao zhou	Jun 13, 2016
GSE157415	Tissue-specific transcription footprinting using RNA PolII DamID (RAPID) in C. elegans [Blastomeres]	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	12	BAM BEDGRAPH CSV SRA Run Selector	Peter Meister	Oct 28, 2020
GSE157416	Tissue-specific transcription footprinting using RNA PolII DamID (RAPID) in C. elegans [Young adult]	Genome binding/occupancy profiling by high throughput sequencing	Caenorhabditis elegans	16	BAM BEDGRAPH CSV SRA Run Selector	Peter Meister	Oct 28, 2020
GSE112479	The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	100	BB BED BW CSV TXT	Bruno Di Stefano	Oct 03, 2019
GSE159411	Transcription Factor Protein Interactomes Reveal Genetic Determinants in Heart Disease	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	95	BB BED BW CSV H5 TXT SRA Run Selector	Deepak Srivastava	Feb 18, 2022
GSE21717	ATAC and Mediator coactivators form a stable complex and regulates a set of non-coding RNA genes	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED CSV SRA Run Selector	Laszlo Tora	Jun 25, 2010
GSE32228	Toward an integrated model of capsule regulation in Cryptococcus neoformans	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Cryptococcus neoformans Cryptococcus neoformans var. neoformans	54	BED CSV CUFF SAM WIG	Brian Clifton Haynes	Dec 10, 2011
GSE34403	Bisulphite-sequencing of chromatin immunoprecipitated DNA directly informs methylation status of histone-modified DNA	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	8	BED CSV WIG	Mark Robinson	Jan 18, 2012
GSE41166	A dynamic H3K27ac signature defines VEGF-regulated endothelial enhancers	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	32	BED CSV TXT SRA Run Selector	Peter J Park	Mar 31, 2013
GSE41950	Genome-wide localization of exosome components to active promoters and chromatin insulators in Drosophila	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster	48	BED CSV SRA Run Selector	Ryan Dale	Jan 29, 2013
GSE43988	The Estrogen receptor alpha regulated NEAT1 long non-coding RNA promotes prostate cancer progression	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	9	BED CSV RPKM	Dimple Chakravarty	Dec 01, 2014
GSE46792	An epigenetic signature of developmental potential in neural stem cells and early neurons [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BED CSV SRA Run Selector	Matt Burney	Jun 09, 2013
GSE46793	An epigenetic signature of developmental potential in neural stem cells and early neurons	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED CSV	Matt Burney	Jun 09, 2013
GSE52628	Genome-wide map of H3K4me3 in 12 day post-partum mouse spermatocytes	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BEDGRAPH CSV TXT SRA Run Selector	Christopher Lee Baker	Feb 24, 2014
GSE54334	EDD: a program for detection of wide genomic enrichment domains robust against local variations	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	7	BED CSV	Philippe Collas	Apr 25, 2014
GSE56307	Histone chaperone HIRA orchestrates H4K16ac-decorated dynamic chromatin in senescent cells and is required for suppression of oncogene-induced neoplasia.	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	BED BIGWIG CSV SRA Run Selector	Peter Adams	Nov 26, 2014