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62 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			COV
GSE124242	De novo formation in maize from irradiated materials	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	3	BED COV SRA Run Selector	Handong Su	Dec 21, 2019
GSE113946	Widespread transposable element-driven oncogene expression in cancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	6	BEDGRAPH BIGWIG COV SRA Run Selector	Daofeng Li	Feb 05, 2019
GSE133578	The deposition of CENH3 is stringently regulated in Maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	COV SRA Run Selector	Handong Su	Jun 01, 2020
GSE176461	DNA sequence and chromatin modifiers determine epigenetic bistability at imprinting control regions	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	7	COV TAB WIG	Tuncay Baubec	Jul 20, 2022
GSE126215	methyl-ATAC-seq measures DNA methylation at accessible chromatin	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BEDGRAPH BW COV SRA Run Selector	Roman Spektor	Feb 08, 2019
GSE243978	Transcriptional heterogeneity overcomes super-enhancer disrupting drug combinations in multiple myeloma [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BW COV TXT	Benjamin G Barwick	Sep 25, 2023
GSE159040	H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination [Bisulfite-seq]	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	9	COV SRA Run Selector	Falong Lu	Jun 27, 2022
GSE156723	DNA methyation of intragenic CpG islands are required for differentiation from iPSC to NPC	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	13	COV NARROWPEAK TXT SRA Run Selector	Young-Joon Kim	Jan 06, 2021
GSE167967	ATAC-seq of Multiple Myeloma	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	13	COV TXT SRA Run Selector	Benjamin G Barwick	Mar 03, 2021
GSE104246	DNA methylation profiling of TF bound sites using ChIPBS (ChIP Bisulfite Sequencing)	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	14	BEDGRAPH COV SRA Run Selector	Eric M Mendenhall	Dec 30, 2021
GSE141149	The role of Vitamin C and TET dioxygenases in genome-wide features of regulatory T cells [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	COV TXT SRA Run Selector	Anjana Rao	Jul 21, 2021
GSE109545	A novel role of Tet1/2 proteins in cell cycle progression of trophoblast stem cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	15	BED COV CSV SRA Run Selector	Myriam Hemberger	May 02, 2018
GSE104248	Towards an integrative map of a single cell type's transcription factor landscape	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	16	BEDGRAPH COV	Eric M Mendenhall	Dec 30, 2021
GSE234658	Decitabine disrupts EBV genomic epiallele DNA methylation patterns around CTCF binding sites to increase chromatin accessibility and lytic transcription in gastric cancer	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	human gammaherpesvirus 4	16	BW COV	Sarah Alp	Jun 14, 2023
GSE246426	ETV4-Dependent Transcriptional Plasticity Maintains MYC Expression and Results in IMiD Resistance in Multiple Myeloma [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	16	BW COV TXT	Benjamin G Barwick	Oct 30, 2023
GSE129691	Setd2 deficiency impaired erythroid differentiation and accelerated Myelodysplastic Syndrome(MDS) - associated leukemogenesis through S100A8 and S100A9	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	18	BED BROADPEAK BW COV TXT XLSX SRA Run Selector	Jiaying Zhang	Jul 02, 2020
GSE244698	Gestational diabetes in mice induces hematopoietic memory that impacts the long-term health of the offspring	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	20	BED COV TXT	Kyle McCracken	Nov 13, 2023
GSE247620	Histone methyltransferase SETDB1 silenced SINE B2 retrotransposons and maintained mitotic cell cycle of neural progenitor cells	Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	22	COV HIC NARROWPEAK	Yan Jiang	Jun 01, 2024
GSE159043	H3K27me3 shapes DNA methylome by inhibiting UHRF1-mediated H3 ubiquitination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	23	BED BROADPEAK BW COV	Falong Lu	Jun 27, 2022
GSE167987	Loss of SETD1B results in the redistribution of genomic H3K4me3 in the oocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	23	COV	Felix Krueger	Jan 17, 2022