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68 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			COOL
GSE98671	Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	102	BED BW COOL FASTA TXT SRA Run Selector	Elphege Nora	May 25, 2017
GSE122463	Anti-cancer drugs curaxins target the 3D genome organization	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BW COOL	Artem Luzhin	Feb 18, 2019
GSE104135	Convergent genes shape budding yeast pericentromeres	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae Schizosaccharomyces pombe	55	BW COOL	Daniel Robertson	Jan 13, 2020
GSE128106	YY1 regulates DNA-DNA interaction	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	16	BED BIGWIG COOL SRA Run Selector	LIN LI	Aug 27, 2020
GSE156868	Molecular basis of CTCF binding polarity in genome folding	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	161	BED COOL FASTA TXT SRA Run Selector	Elphege Nora	Aug 30, 2020
GSE163371	Genomic instability is an early event driving chromatin organization and “escape” from oncogene-induced senescence	Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	4	BED COOL SRA Run Selector	Argyris Papantonis	Mar 31, 2021
GSE160563	RIF1 is necessary to maintain the global epigenetic state in human cells.	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	156	BIGWIG BW COOL MAT TXT SRA Run Selector	David M Gilbert	Apr 26, 2021
GSE172051	Targeting P300/CBP reveals discrete regulation of transcription and chromatin accessibility by histone acetylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens	135	BW COOL	Simon J Hogg	May 11, 2021
GSE168251	CTCF and transcription orchestrate chromatin structure re-configuration after mitosis	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	44	BW COOL NARROWPEAK	Yemin Lan	Jun 17, 2021
GSE166584	Induction of a chromatin boundary in vivo upon insertion of a TAD border	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	15	BED BEDGRAPH BW COOL TXT	Lucille Lopez-Delisle	Jul 05, 2021
GSE165495	Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing Third-party reanalysis	Mus musculus	23	BW COOL NARROWPEAK TAR TXT	Lucille Lopez-Delisle	Jul 20, 2021
GSE166387	Sensitivity of cohesin-chromatin association to high salt treatment corroborates non-topological mode of loop extrusion	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	46	BW COOL SRA Run Selector	Arkadiy Golov	Jul 20, 2021
GSE179641	Cohesin regulates homology search during recombinational DNA repair [Hi-C]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae W303	73	COOL	Helene Bordelet	Jul 21, 2021
GSE179646	Cohesin regulates homology search during recombinational DNA repair	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae W303	101	BED COOL	Helene Bordelet	Jul 21, 2021
GSE155638	Stage-resolved genome architecture maps throughout meiotic prophase link regional variations in chromosome organization with homolog alignment	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	COOL SRA Run Selector	Qian Bian	Aug 25, 2021
GSE155967	Stage-resolved genome architecture maps throughout meiotic prophase link regional variations in chromosome organization with homolog alignment (Hi-C, Cut&Tag, RNA-seq)	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	22	BW COOL TXT SRA Run Selector	Qian Bian	Aug 25, 2021
GSE145997	Non-coding genetic variation in GATA3 increases acute lymphoblastic leukemia risk through local and global changes in chromatin conformation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	74	COOL NARROWPEAK TXT SRA Run Selector	Yu Luan	Sep 13, 2021
GSE158336	A compendium of chromatin contact maps reflecting regulation by chromatin remodelers in budding yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	84	COOL SRA Run Selector	Hyelim Jo	Sep 29, 2021
GSE181387	Cumulative in-cis mutagenesis in vivo reveals various functions for CTCF sites at the mouse Hoxd cluster	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	86	BW COOL NARROWPEAK TXT	Lucille Lopez-Delisle	Oct 05, 2021
GSE177064	Tcf1 preprograms glycolysis mobilization in central memory CD8+ T cells in recall response	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BED BW COOL TXT SRA Run Selector	Haihui Xue	Nov 10, 2021