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739 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			BROADPEAK
GSE132906	siQ-ChIP: A reverse-engineered quantitative framework for ChIP-sequencing	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	9	BED BEDGRAPH BROADPEAK SRA Run Selector	Scott Rothbart	Sep 28, 2020
GSE182133	p63 Directs Subtype Specific Gene Expression in HPV+ Head and Neck Squamous Cell Carcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	25	BED BROADPEAK NARROWPEAK TXT SRA Run Selector	Satrajit Sinha	Apr 19, 2022
GSE236372	p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	26	BROADPEAK BW NARROWPEAK	Biola M Javierre	Apr 17, 2024
GSE235947	p53 rapidly restructures 3D chromatin organization to trigger a transcriptional response	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	54	BROADPEAK BW IBED NARROWPEAK TXT	Biola M Javierre	Apr 17, 2024
GSE173550	mSWI/SNF promotes polycomb repression both directly and through genome-wide redistribution [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	50	BED BROADPEAK BW SRA Run Selector	Christopher Michael Weber	Jun 11, 2021
GSE145016	mSWI/SNF promotes distal repression by titrating polycomb dosage	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	94	BED BROADPEAK BW TSV	Christopher Michael Weber	Jun 11, 2021
GSE163709	key histone modifications in porcine oocytes and early embryos	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa	30	BROADPEAK BW SRA Run Selector	Wei Zhu	Jul 08, 2022
GSE243804	aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Brassica napus Citrus sinensis Dianthus caryophyllus Glycine max Oryza sativa Populus Saccharum officinarum Solanum lycopersicum Solanum tuberosum Zea mays	152	BROADPEAK NARROWPEAK	Wenying Zhong	Apr 28, 2024
GSE243806	aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana Brassica napus Citrus sinensis Dianthus caryophyllus Glycine max Oryza sativa Populus Saccharum officinarum Solanum lycopersicum Solanum tuberosum Zea mays	160	BROADPEAK NARROWPEAK	Wenying Zhong	Apr 28, 2024
GSE166650	Zebrafish tumors driven by overexpression of human IRF4	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio	44	BED BROADPEAK H5	Tze King Tan	Mar 14, 2022
GSE159257	Zeb1-knockdown retina endothelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BROADPEAK	Qing Cissy Yu	Oct 08, 2023
GSE248731	ZNF143 deletion alters enhancer/promoter looping and CTCF/cohesin geometry (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	BROADPEAK BW	Mo Zhang	Dec 21, 2023
GSE248737	ZNF143 deletion alters enhancer/promoter looping and CTCF/cohesin geometry	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	3	BROADPEAK BW	Mo Zhang	Dec 21, 2023
GSE176322	ZFP462 safeguards neural lineage specification by targeting G9A/GLP mediated heterochromatin to silence enhancers [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BROADPEAK SRA Run Selector	Ramesh Yelagandula	Jan 04, 2023
GSE175369	ZFP462 safeguards neural lineage specification by targeting G9A/GLP mediated heterochromatin to silence enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	134	BROADPEAK BW TXT	Ramesh Yelagandula	Jan 04, 2023
GSE154527	YAP regulates NFI/KLF5 transcriptional and epigenetic networks directing alveolar epithelial cell differentiation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	28	BROADPEAK CSV TXT SRA Run Selector	John M. Snowball	Aug 16, 2021
GSE241444	XIST directly regulates X-linked and autosomal genes in naïve human pluripotent cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	129	BEDGRAPH BROADPEAK	Kathrin Plath	Dec 13, 2023
GSE153335	WHSC1/NSD2 regulates immune infiltration in prostate cancer [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BROADPEAK SRA Run Selector	Eduardo Cortes	Dec 11, 2020
GSE153336	WHSC1/NSD2 regulates immune infiltration in prostate cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BROADPEAK	Eduardo Cortes	Dec 11, 2020
GSE275024	Valine-restricted diet regulates DNA methylation [H3K4me1 ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	1	BROADPEAK	Yu Yuanyuan	Sep 23, 2024