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734 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			BROADPEAK
GSE185066	Local euchromatin enrichment in lamina-associated domains anticipates their re-positioning in the adipogenic lineage	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	82	BED BEDGRAPH BROADPEAK BW NARROWPEAK TXT SRA Run Selector	Philippe Collas	Mar 21, 2022
GSE214264	3D genome structures of single differentiating mouse ES cells reveal a unique reorganisation of chromatin in the formative state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	101	BROADPEAK BW CSV NARROWPEAK NCC TSV TXT	David Lando	Jan 19, 2024
GSE218880	5-methyl cytosine profile and chromatin profile of Anthoceros agrestis	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Anthoceros agrestis	20	BEDGRAPH BROADPEAK BW TXT	Tetsuya Hisanaga	Nov 10, 2023
GSE124998	A Cut/cohesin axis altersthe chromatin landscape to facilitate neuroblast death	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	4	BB BROADPEAK SRA Run Selector	Lei Zhou	Apr 17, 2019
GSE222734	A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa Japonica Group	24	BROADPEAK BW NARROWPEAK TXT	Qingxiao Jia	Jul 26, 2023
GSE129768	A Long Noncoding RNA, LncMyod, Regulates Myogenic Lineage Progression by Modulating Chromatin Accessibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BROADPEAK BW	Tom Cheung	Dec 08, 2020
GSE125622	A Mediator-cohesin axis controls heterochromatin domain formation [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	21	BED BROADPEAK NARROWPEAK SRA Run Selector	Robin H. van der Weide	Jan 11, 2022
GSE125672	A Mediator-cohesin axis controls heterochromatin domain formation.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	58	BED BROADPEAK NARROWPEAK TXT	Robin H. van der Weide	Jan 11, 2022
GSE104690	A Non-canonical BCOR-PRC1.1 Complex Represses Differentiation Programs in Human ESCs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	42	BIGWIG BROADPEAK CSV SRA Run Selector	Micah Gearhart	Jan 11, 2018
GSE241522	A branching model of lineage differentiation underpinning the neurogenic potential of enteric glia (bulk ATAC-seq data from ganglioid cultures)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BROADPEAK GAPPEDPEAK TXT	Vassilis Pachnis	Sep 01, 2023
GSE186201	A chemically-targetable transcription factor-chromatin remodeler interaction underlies SARS-CoV-2 susceptibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Chlorocebus sabaeus Homo sapiens	85	BROADPEAK BW NARROWPEAK TXT SRA Run Selector	Cigall Kadoch	Oct 11, 2022
GSE212234	A common cis-regulatory variant impacts normal-range and disease-associated human facial shape through regulation of PDKCC during chondrogenesis	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	35	BEDPE BROADPEAK BW TSV	Jaaved Mohammed	Jun 23, 2023
GSE212225	A common cis-regulatory variant impacts normal-range and disease-associated human facial shape through regulation of PDKCC during chondrogenesis [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BROADPEAK BW	Jaaved Mohammed	Jun 23, 2023
GSE49847	A comparative encyclopedia of DNA elements in the mouse genome	Expression profiling by high throughput sequencing Genome variation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	588	BAM BEDRNAELEMENTS BIGWIG BROADPEAK NARROWPEAK PAIR	ENCODE DCC	Aug 14, 2013
GSE166674	A comprehensive transcriptome signature of murine hematopoietic stem cell aging	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BROADPEAK CSV NARROWPEAK SRA Run Selector	Leonid Bystrykh	Apr 02, 2021
GSE85177	A general transcription co-factor, Smad3, potentiates master transcription factor mediated cell identity conversions [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	BIGWIG BROADPEAK GAPPEDPEAK NARROWPEAK TAB TSV SRA Run Selector	Keisuke Kaji	Nov 03, 2017
GSE167409	A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	39	BROADPEAK TSV TXT SRA Run Selector	Frank M.J. Jacobs	Jan 17, 2022
GSE130205	A hybrid signal/sequence model to detect RNA polymerase activity in ATAC-seq	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens	2	BROADPEAK SRA Run Selector	Ignacio Javier Tripodi	Apr 30, 2020
GSE126778	A missense mutation in AIOLOS causes B cell deficiency by interfering with IKAROS	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BROADPEAK TXT SRA Run Selector	Kazuki Okuyama	Feb 16, 2022
GSE185215	A phenotypic screening platform for identifying chemical modulators of astrocyte reactivity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	97	BROADPEAK BW MTX NARROWPEAK TSV	Benjamin L.L. Clayton	Jan 10, 2024