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178 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			BEDPE
GSE55581	Diet-induced chromatin remodeling in mice livers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	20	BED BEDPE DIFF NARROWPEAK SRA Run Selector	Amy Leung	Jul 17, 2014
GSE90561	Sox2 is required for functional chromatin connectivity in brain-derived neural stem cells.	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	65	BED BEDGRAPH BEDPE TXT	Federico Zambelli	Mar 07, 2019
GSE115363	ESRRB regulates glucocorticoid gene expression in mice and patients with acute lymphoblastic leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	20	BED BEDPE TXT SRA Run Selector	Julie Zhu	Jul 20, 2020
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE133928	A topological atlas reveals layers of genome reorganization in colorectal cancer	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	175	BED BEDPE BW CPG MATRIX TXT SRA Run Selector	Alejandro Reyes	Aug 24, 2020
GSE136889	Epigenomics landscape of colorectal cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	309	BED BEDPE TAB TXT	Ayush T Raman	May 22, 2021
GSE137661	Chromatin Topology Reorganization and Transcription Repression by PML/RARα in Acute Promyeloid Leukemia (ChIA-PET)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BED BEDPE HIC TXT SRA Run Selector	Yijun Ruan	Dec 05, 2019
GSE137662	Chromatin Topology Reorganization and Transcription Repression by PML/RARα in Acute Promyeloid Leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED BEDPE HIC TXT	Yijun Ruan	Dec 05, 2019
GSE137711	High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	288	BED BEDPE BW	Folkert van Werven	Dec 15, 2020
GSE138543	Suppression of liquid-liquid phase separation by 1,6-hexanediol partially compromises the 3D genome organization in living cells	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	22	BED BEDPE BW MCOOL TXT SRA Run Selector	Mikhail Magnitov	Mar 22, 2021
GSE138822	The chromatin remodeling enzyme Chd4 regulates genome architecture in the mouse brain	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	38	BED BEDPE BIGWIG CSV HIC TXT SRA Run Selector	Jared V Goodman	Apr 13, 2020
GSE141752	Quantitative trait loci mapped for TCF21 binding, chromatin accessibility and chromosomal looping in coronary artery smooth muscle cells reveal molecular mechanisms of coronary disease loci	Genome binding/occupancy profiling by high throughput sequencing Other SNP genotyping by SNP array Genome variation profiling by SNP array	Homo sapiens	18	BED BEDPE HIC TXT	Thomas Quertermous	May 07, 2020
GSE160943	Oct1 cooperates with Smad transcription factors to promote mesodermal lineage specification	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BED BEDGRAPH BEDPE BW	Dean Tantin	Nov 26, 2022
GSE163177	3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Macaca mulatta	18	BED BEDPE BW HIC NARROWPEAK TXT SRA Run Selector	Yuting Liu	Dec 15, 2020
GSE168459	IKAROS and MENIN are Functionally Cooperative Therapeutic Targets in Acute Myeloid Leukemia [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	2	BED BEDPE TDF SRA Run Selector	Charlie Hatton	Mar 10, 2022
GSE168463	IKAROS and MENIN are Functionally Cooperative Therapeutic Targets in Acute Myeloid Leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	87	BED BEDPE TDF	Charlie Hatton	Mar 10, 2022
GSE172358	Differential Regulation of Transcription Factor T-bet Induction during NK Cell Development and Th1 Cell Differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	BED BEDPE NARROWPEAK SRA Run Selector	Yaqiang Cao	Feb 03, 2022
GSE180198	EWSR1-ATF1 dependent 3D connectivity regulates oncogenic and differentiation programs in Clear Cell Sarcoma	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	147	BED BEDPE BW HIC	Nicolo Riggi	Mar 04, 2022
GSE181215	Requirement for TP73 in cancer cell maintenance and genetic alterations originating from its intragenic super-enhancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	25	BED BEDPE BW NARROWPEAK TXT	Tze King Tan	Nov 20, 2023
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023