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2925 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			BEDGRAPH
GSE59124	Sequential centromere shift via de novo formation in maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	6	BEDGRAPH SRA Run Selector	Handong Su	Mar 03, 2015
GSE152074	Structure, composition and evolution of the nonvital B chromosome of maize	Genome binding/occupancy profiling by high throughput sequencing	Zea mays	1	BEDGRAPH SRA Run Selector	Handong Su	May 22, 2021
GSE162678	maize DDM1 targets RNA-directed DNA methylation on active chromatin	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Zea mays	28	BEDGRAPH FPKM_TRACKING TXT SRA Run Selector	Jincheng Long	Dec 05, 2020
GSE85273	Foxh1 marks the embryonic genome prior to the activation of the mesendoderm gene regulatory program	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Xenopus tropicalis	11	BED BEDGRAPH SRA Run Selector	Rebekah M Charney	Mar 30, 2017
GSE113186	Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Xenopus tropicalis	202	BED BEDGRAPH BW TXT SRA Run Selector	George E. Gentsch	Apr 16, 2019
GSE237049	Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Mus musculus	9	BED BEDGRAPH	Roman R Stocsits	Oct 25, 2023
GSE237051	Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei	Genome binding/occupancy profiling by high throughput sequencing Other	Xenopus laevis Mus musculus Homo sapiens	28	BED BEDGRAPH HIC	Roman R Stocsits	Oct 25, 2023
GSE280790	Foxi1 regulates multiple steps of mucociliary development and ionocyte specification through transcriptional and epigenetic mechanisms	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis	6	BED BEDGRAPH BIGWIG	Peter Walentek	Nov 03, 2024
GSE274215	Negative feedback of cyclic di-GMP levels optimizes switching between sessile and motile lifestyles in Vibrio cholerae [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Vibrio cholerae C6706	91	BEDGRAPH BW	Lydia Freddolino	Oct 09, 2024
GSE203326	Genome-wide mapping of H3K4 tri-methylation in ΔUvkmt2 mutant strain of Ustilaginoidea virens	Genome binding/occupancy profiling by high throughput sequencing	Ustilaginoidea virens	8	BEDGRAPH TXT	Chuyu Lin	May 25, 2022
GSE140245	Global changes in nitration levels and DNA binding profile of Trypanosoma cruzi histones induced by incubation with host extracellular matrix	Genome binding/occupancy profiling by high throughput sequencing	Trypanosoma cruzi	4	BEDGRAPH SRA Run Selector	Rubens Daniel Miserani Magalhães	Jun 17, 2020
GSE63752	Centromere misdivision promotes centromeric sequence changes, de novo centromere formation, and centromere expansion	Genome binding/occupancy profiling by high throughput sequencing	Triticum aestivum	2	BEDGRAPH SRA Run Selector	Handong Su	Apr 02, 2016
GSE178372	Distinct chromatin signatures and transcriptional landscape of functional genetic elements in allohexaploid wheat	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Triticum aestivum	27	BED BEDGRAPH BW TXT	yijing zhang	Jun 17, 2021
GSE132250	Identification of a master regulator of differentiation in Toxoplasma	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Toxoplasma gondii	63	BEDGRAPH NARROWPEAK TXT	Benjamin S Waldman	Jan 16, 2020
GSE139538	CUT&RUN profiling of genomic BFD1 binding sites	Genome binding/occupancy profiling by high throughput sequencing	Toxoplasma gondii	2	BEDGRAPH NARROWPEAK SRA Run Selector	Benjamin S Waldman	Jan 16, 2020
GSE215810	Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for RNA-polymerases encoded by P23-45 bacteriophage	Genome binding/occupancy profiling by high throughput sequencing	Thermus thermophilus HB8	21	BEDGRAPH	Rob Lavigne	Dec 12, 2023
GSE215812	T. thermophilus infected with phage P23-45	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Thermus thermophilus HB8	23	BEDGRAPH TXT	Rob Lavigne	Dec 12, 2023
GSE267298	Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA shape [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Thermococcus kodakarensis	28	BED BEDGRAPH	Naomichi Takemata	Dec 15, 2024
GSE120589	The mole genome reveals regulatory rearrangements associated with adaptive intersexuality	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Talpa occidentalis Mus musculus	70	BEDGRAPH BW HIC	Francisca Martinez Real	Oct 09, 2020
GSE118118	A combination of transcription factors mediates inducible interchromosomal contacts	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Saccharomyces cerevisiae x Saccharomyces uvarum Saccharomyces cerevisiae	123	BED BEDGRAPH FA GFF TXT SRA Run Selector	Seungsoo Kim	Aug 05, 2018