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2854 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing			BEDGRAPH
GSE20898	Genome-wide Analyses of Transcription Factor GATA3-Mediated Gene Regulation in Distinct T Cell Types	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	53	BED BEDGRAPH RPKM SRA Run Selector	Brian J Abraham	Aug 26, 2011
GSE62151	Upstream Anti-sense Promoters Act as Local Enhancers of Mammalian Protein-coding Genes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	17	BEDGRAPH BW WIG SRA Run Selector	Karen Adelman	Jun 23, 2015
GSE85191	Widespread transcriptional pausing and elongation control at enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Mus musculus	37	BEDGRAPH BW SRA Run Selector	Karen Adelman	Mar 09, 2018
GSE114467	The Integrator complex terminates promoter-proximal transcription at protein-coding genes	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	16	BEDGRAPH BW SRA Run Selector	Karen Adelman	Nov 27, 2019
GSE85579	Genomic Regulation of Invasion by STAT3 in Triple Negative Breast Cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	54	BEDGRAPH TXT SRA Run Selector	Joy Agee	Jun 10, 2017
GSE56826	Argonaute-1 binds transcriptional enhancers and controls constitutive and alternative splicing in human cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	28	BED BEDGRAPH TXT XLS SRA Run Selector	Eneritz Agirre	Sep 29, 2014
GSE60094	A chromatin code for alternative splicing involving an association between CTCF and HP1α proteins	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	34	BED BEDGRAPH CEL CHP TXT	Eneritz Agirre	Sep 30, 2014
GSE115929	PAD2-mediated citrullination contributes to efficient oligodendrocyte differentiation and myelination	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BEDGRAPH SRA Run Selector	Eneritz Agirre	Apr 23, 2019
GSE121028	Distinct Polycomb Response Elements control chromatin state and gene activation of the vestigial gene	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	13	BEDGRAPH PDF SRA Run Selector	Kami Ahmad	May 01, 2019
GSE130334	H4K16ac developmental dynamics during Drosophila development [DNA]	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster	70	BED BEDGRAPH BW H5 SRA Run Selector	Asifa Akhtar	Jun 04, 2020
GSE117569	Analysis of the Phosphorylated Estrogen Receptor-α Cistrome Reveals Association with Direct ER-DNA Binding and the Transcription Factor GRHL2	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	25	BED BEDGRAPH SRA Run Selector	Elaine T Alarid	Dec 11, 2018
GSE173536	Blood cells with trisomy 21 overreact to heat shock stress [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	14	BEDGRAPH NARROWPEAK SRA Run Selector	Mary Ann Allen	Apr 21, 2023
GSE273555	Post-prandial cardiac hypertrophy is sustained by mechanics, epigenetic, and metabolic reprogramming in pythons [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Python regius	14	BED BEDGRAPH	Mary Ann Allen	Aug 04, 2024
GSE73143	Differential Peak Calling of ChIP-Seq Signals with Replicates with THOR	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	16	BED BEDGRAPH SRA Run Selector	Manuel Allhoff	Aug 03, 2016
GSE190267	Proteasome-dependent truncation of the negative heterochromatin regulator Epe1 mediates antifungal resistance	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Schizosaccharomyces pombe	30	BEDGRAPH SF TXT SRA Run Selector	Robin Allshire	May 04, 2022
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE142781	CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	170	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	May 11, 2020
GSE151910	Loop Extrusion Mediates Physiological Locus Contraction for V(D)J Recombination	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	138	BEDGRAPH BW TXT XLS	Frederick W Alt	Nov 07, 2020
GSE99407	Mapping PRDM9 binding and its effects in transfected HEK293T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	27	BEDGRAPH DIFF TXT SRA Run Selector	Nicolas Altemose	May 31, 2017