GEO Browser - GEO

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19 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by high throughput sequencing				Christopher Benner
GSE21512	Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED FA TXT SRA Run Selector	Christopher Benner	May 27, 2010
GSE21978	A global network of transcription factors, involving E2A, EBF1 and FOXO1, that orchestrates the B cell fate	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	30	BED FA TXT SRA Run Selector	Christopher Benner	Jun 13, 2010
GSE23619	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes (Illumina sequencing data)	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BED FA TXT SRA Run Selector	Christopher Benner	Jan 01, 2011
GSE23622	Mechanisms Establishing TLR4-Responsive Activation States of Inflammatory Response Genes	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	55	BED FA TXT	Christopher Benner	Jan 01, 2011
GSE27823	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells [ChIP-Seq, Gro-Seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED BEDGRAPH FA SRA Run Selector	Christopher Benner	May 15, 2011
GSE27824	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	42	BED BEDGRAPH FA	Christopher Benner	May 15, 2011
GSE40173	Global changes in the nuclear positioning of chromatin domains and genomic interactions that orchestrate B cell fate	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BED BEDGRAPH TXT SRA Run Selector	Christopher Benner	Oct 09, 2012
GSE54443	Mutant Huntingtin promotes neuronal death through cell autonomous microglial activation via myeloid lineage- determining factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BED TXT SRA Run Selector	Christopher Benner	Mar 02, 2014
GSE60604	An alternative pluripotent state confers interspecies chimaeric competency [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BIGWIG SRA Run Selector	Christopher Benner	May 06, 2015
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE64008	Nucleoporin Nup153 Regulates Stem Cell Pluripotency through Gene Silencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BED TXT SRA Run Selector	Christopher Benner	Jun 19, 2015
GSE68647	The DAXX co-repressor is directly recruited to active regulatory elements genome-wide to regulate autophagy programs in a model of human prostate cancer (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED SRA Run Selector	Christopher Benner	Jun 24, 2015
GSE68656	The DAXX co-repressor is directly recruited to active regulatory elements genome-wide to regulate autophagy programs in a model of human prostate cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BED	Christopher Benner	Jun 24, 2015
GSE87831	Nucleoporin-mediated regulation of cell identity genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	33	BED TXT SRA Run Selector	Christopher Benner	Nov 15, 2016
GSE103477	Transcription elongation regulates genome 3D structure	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Homo sapiens	253	BED BEDGRAPH HIC TXT SRA Run Selector	Christopher Benner	Aug 23, 2018
GSE69932	Comparison of the transcriptome and chromatin state between human cord blood HSC and human iPSC derived hematopoietic progenitor using next-generation sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	9	BED TXT SRA Run Selector	Christopher Benner	Jan 01, 2019
GSE193757	Glucocorticoid receptor-regulated enhancers play a central role in the gene regulatory networks underlying drug addiction	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Rattus norvegicus	36	BED CSV H5 HIC TSV TXT	Christopher Benner	May 11, 2022
GSE192365	Evolution of gene regulatory networks during human cardiogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	53	TXT SRA Run Selector	Christopher Benner	Jul 15, 2022
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024