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86 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing			TBI
GSE161132	Decoding Cortical Glial Cell Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 MTX TBI TSV SRA Run Selector	Guoping Liu	Feb 05, 2021
GSE158196	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 TBI TSV SRA Run Selector	Danielle R. Little	Mar 08, 2021
GSE158205	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78	BED BEDGRAPH BROADPEAK CLOUPE CSV H5 NARROWPEAK TBI TSV	Danielle R. Little	Mar 08, 2021
GSE189210	Parallel single cell multi-omics analysis of neonatal skin reveals transitional fibroblast states that restrict differentiation into distinct fates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED CSV H5 MTX TBI TSV SRA Run Selector	Sean Thompson	Nov 24, 2021
GSE190057	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	15	BED HIC MTX TBI TSV TXT	CBDM Lab	Dec 03, 2021
GSE190054	FoxP3 associates with enhancer-promoter loops to regulate Treg-specific gene expression [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED MTX TBI TSV TXT SRA Run Selector	CBDM Lab	Dec 07, 2021
GSE193238	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDPE H5 RDS TBI TSV WIG	Eneritz Agirre	Jan 28, 2022
GSE190795	IL-9 is required for multi-cytokine producing tissue-resident memory CD4+ T cell-dependent allergic airway recall responses	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	14	CSV H5 TBI TSV SRA Run Selector	Rakshin Kharwadkar	Jan 31, 2022
GSE183310	Decoding the PITX2 controlled genetic network in atrial fibrillation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 MTX TBI TSV TXT SRA Run Selector	Jeffrey D. Steimle	Apr 28, 2022
GSE188669	Divergent clonal differentiation trajectories of T cell exhaustion (scATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	TBI TSV SRA Run Selector	Ansuman T Satpathy	Jul 25, 2022
GSE188670	Divergent clonal differentiation trajectories of T cell exhaustion	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	57	CSV TBI TSV	Ansuman T Satpathy	Jul 25, 2022
GSE198730	Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	39	BED CSV H5 HIC MTX TBI TSV XLSX	Vittorio Sartorelli	Jul 31, 2022
GSE210938	Single cell ATAC-seq analysis of the kidney in a murine endotoxemia model	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CLOUPE H5 TBI TSV	Takashi Hato	Aug 17, 2022
GSE205065	A novel lineage of RORγt+ antigen presenting cells instructs microbiota-dependent regulatory T cell differentiation and tolerance during early life [multiome scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	TBI TSV	Chrysothemis Brown	Sep 06, 2022
GSE199556	Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates [scATAC-Seq 1]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED CSV H5 TBI TSV	E JOHN WHERRY	Oct 31, 2022
GSE199557	Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates [scATAC-Seq 2]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED CSV H5 TBI TSV	E JOHN WHERRY	Oct 31, 2022
GSE199565	Longitudinal single cell transcriptional and epigenetic mapping of effector, memory, and exhausted CD8 T cells reveals shared biological circuits across distinct cell fates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	CSV H5 MTX TBI TSV	E JOHN WHERRY	Oct 31, 2022
GSE178988	Transcriptional programs dictating Schwann cell transformation in MPNST [scATACseq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	3	CSV H5 TBI TSV SRA Run Selector	Lai Man (Natalie) Wu	Nov 07, 2022
GSE179043	Transcriptional programs dictating Schwann cell transformation in MPNST	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	50	CSV H5 TAR TBI TSV TXT	Lai Man (Natalie) Wu	Nov 07, 2022
GSE209610	Lineage tracing and single nuclear multiomics reveal novel features of adaptive and maladaptive repair after acute kidney injury	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	H5 TBI TSV	Kari Ann Koppitch	Nov 22, 2022