GEO Browser - GEO

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368 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing			NARROWPEAK
GSE222972	Epigenomic analysis of regulatory evolution in mole rats	Genome binding/occupancy profiling by high throughput sequencing Other	Cavia porcellus Fukomys damarensis Heterocephalus glaber Mus musculus	160	NARROWPEAK WIG	Diego Villar	Aug 21, 2023
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE213876	Sequencing of N6-methyl-deoxyadenosine at single-base resolution across the mammalian genome	Other Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Mus musculus synthetic construct	67	NARROWPEAK TXT	Xiaolong Cui	Dec 28, 2023
GSE160653	The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	3	BEDGRAPH NARROWPEAK SRA Run Selector	Giuliano Crispatzu	Dec 31, 2020
GSE160654	The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	12	BEDGRAPH BROADPEAK NARROWPEAK SRA Run Selector	Giuliano Crispatzu	Dec 31, 2020
GSE160657	The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	28	BED BEDGRAPH BROADPEAK NARROWPEAK TXT	Giuliano Crispatzu	Dec 31, 2020
GSE144757	Genome-wide maps of QKI-5, SREBP2, and POL II in eye lens cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	BED NARROWPEAK SRA Run Selector	Chenxi He	Jan 29, 2021
GSE149267	DUX/DUX4 activation is coupled to p53 signaling in embryos, 2C-like cells, and FSHD patient cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	76	NARROWPEAK	Edward John Grow	May 20, 2021
GSE162668	Disruption of higher order nuclear condensates by a dominant negative FOXN1 mutation causes immunodeficiency	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	36	NARROWPEAK TXT SRA Run Selector	Adam Handel	Oct 12, 2021
GSE163306	FFPE-ATAC decodes the chromatin accessibility from the clinical archived FFPE tissues	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	68	NARROWPEAK TXT SRA Run Selector	xingqi chen	Jun 30, 2021
GSE168600	KLF5 governs sphingolipid metabolism and barrier function of the skin	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16	NARROWPEAK TSV TXT SRA Run Selector	Yejing Ge	Aug 18, 2022
GSE169431	Transcriptional Activation of Regenerative Haematopoiesis via Niche Sensing	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus Mus musculus	42	H5 NARROWPEAK TBI TSV	Tomer Itkin	Apr 01, 2024
GSE174642	Proteome-wide profiling of Transcriptional Machinery on Accessible Chromatin by biotinylated transposon (various cell lines II)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	17	NARROWPEAK SRA Run Selector	Haizhu Zhang	Jan 16, 2024
GSE174643	Proteome-wide profiling of Transcriptional Machinery on Accessible Chromatin by biotinylated transposon	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	42	NARROWPEAK	Haizhu Zhang	Jan 16, 2024
GSE176068	Hyperglycaemia induces trained immunity in macrophages and their precursors and promotes atherosclerosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	126	NARROWPEAK	Robin Choudhury	Jul 16, 2021
GSE181499	ZNF384 fusion oncoproteins drive lineage aberrancy in acute leukemia	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	81	BW MTX NARROWPEAK TSV TXT	QINGSONG GAO	Aug 31, 2022
GSE183674	Pancreas agenesis mutations disrupt a lead enhancer controlling a developmental enhancer cluster	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	18	BROADPEAK BW NARROWPEAK	Irene Miguel-Escalada	Jun 30, 2022
GSE183806	Chromatin architecture of B cell development during the humoral immune response	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	107	BIGWIG BW MCOOL NARROWPEAK SF	Ashley Stephen Doane	Sep 09, 2021
GSE183873	Epigenetic basis of oncogenic-Kras mediated epithelial-cellular proliferation and plasticity [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	49	NARROWPEAK SRA Run Selector	Preetish Kadur Lakshminarasimha Murthy	Dec 22, 2021