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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter	Platform: GPL24247	Genome binding/occupancy profiling by high throughput sequencing				CLOUPE
GSE158730	NFI transcription factors regulate zonal olfactory receptor expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	237		BIGWIG BW CIF CLOUPE COOL CSV H5 JSON PNG TIFF TXT SRA Run Selector	Elizaveta Bashkirova	Jun 14, 2023
GSE234680	THAP1 is a master regulator of zinc finger transcription factors guiding gastrulation of murine embryos	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus Rattus norvegicus	53		BIGWIG CLOUPE TAB TXT	Fubo Cheng	Aug 01, 2024
GSE247130	CEBPA restricts alveolar type 2 cell plasticity during development and injury-repair [1]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12		BROADPEAK CLOUPE H5 RDS TBI TSV	Dalia Hassan	Apr 18, 2024
GSE210938	Single cell ATAC-seq analysis of the kidney in a murine endotoxemia model	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8		BED CLOUPE H5 TBI TSV	Takashi Hato	Aug 17, 2022
GSE158196	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1		BED BEDGRAPH BROADPEAK CLOUPE CSV H5 TBI TSV SRA Run Selector	Danielle R. Little	Mar 08, 2021
GSE158205	Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	78		BED BEDGRAPH BROADPEAK CLOUPE CSV H5 NARROWPEAK TBI TSV	Danielle R. Little	Mar 08, 2021
GSE233470	EZH2 inhibtion and IFNy treatment of patient derived organoids	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	54		CLOUPE	Jinpeng Liu	May 31, 2023
GSE234167	MERTK inhibition for the treatment of tissue fibrosis [scMultiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4		BED BIGWIG CLOUPE CSV H5 TBI TSV	Ziyan Pan	Mar 05, 2024
GSE235624	MERTK inhibition for the treatment of tissue fibrosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	154		BED BEDGRAPH BIGWIG BW CLOUPE CSV H5 TAB TBI TSV	Ziyan Pan	Mar 05, 2024
GSE125595	RNA interactions are essential for proper CTCF function	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	24		BW CLOUPE HIC TXT SRA Run Selector	Ricardo Saldana-Meyer	Sep 12, 2019