GEO Browser - GEO

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279 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing			TSV
GSE229169	Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate motor cortex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus	46	MTX TSV	Bing Ren	Oct 31, 2023
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE184036	Single-cell profiling of histone modifications and transcription in developmental systems with EpiDamID	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	155	BEDGRAPH BROADPEAK HDF5 NARROWPEAK TSV	Jop Kind	Apr 01, 2022
GSE241159	Interspecies comparison reveals Hmga1 as driver of cardiac regeneration	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Mus musculus	42	BW CSV TSV	Mara Bouwman	Nov 15, 2024
GSE128818	Aberrant phase separation of transcription factors in human developmental disorders	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Gallus gallus Mus musculus	19	BED BW MTX TSV SRA Run Selector	Denes Hnisz	May 07, 2020
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015
GSE108639	Simultaneous quantifications of protein-DNA contacts and transcriptomics in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	28	TSV WIG	Koos Rooijers	Apr 21, 2019
GSE128671	Replicational dilution of H3K27me3 in mammalian cells and the role of poised promoters	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	47	BW MTX TSV TXT SRA Run Selector	Ramesh Shivdasani	Jan 17, 2020
GSE133110	Thyroid hormone action in human hepatocytes and the Cistromes of TRB1 and ChREBP in liver of mice	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	41	TSV SRA Run Selector	arturo mendoza	Nov 16, 2021
GSE133417	A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	60	BW MTX NARROWPEAK TSV	Caleb Lareau	Dec 31, 2021
GSE137311	Epigenomic Profiling and Single_Nucleus_RNA_Seq of Adult Human Retina, Macula, and RPE/Choroid	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	75	BW TSV TXT SRA Run Selector	Timothy J Cherry	Mar 03, 2020
GSE139950	Chromatin-accessibility estimation from single-cell ATAC data with scOpen	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BED MTX TSV SRA Run Selector	Zhijian Li	Sep 17, 2021
GSE144718	Gene regulation by gonadal hormone receptors defines brain sex differences	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	95	BW NARROWPEAK TSV	Melody Wu	Apr 20, 2022
GSE145194	Single-cell epigenomics identifies a premetastatic regulatory program in lung adenocarcinoma	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	10	TSV	Lindsay M LaFave	Jul 23, 2020
GSE148695	SATB2 preserves colon stem cell identity and mediates ileum-colon conversion via enhancer remodeling	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	148	BED BW MTX TSV	Wei Gu	Oct 05, 2021
GSE148981	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BW CSV H5 TAB TBI TSV TXT	Remy Bosselut	Nov 25, 2020
GSE149031	Che-1/AATF-induced transcriptionally active chromatin promotes cell proliferation in Multiple Myeloma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	33	BED BROADPEAK BW TSV TXT XLSX SRA Run Selector	Maurizio Fanciulli	Dec 08, 2020
GSE154963	ZNF410 uniquely activates the NuRD component CHD4 to silence fetal hemoglobin expression	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	44	BW TSV	xianjiang lan	Dec 09, 2020
GSE162798	Simple oligonucleotide-based multiplexing of single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED CSV MTX TBI TSV TXT SRA Run Selector	Anil K Sood	Oct 20, 2021
GSE167232	Integration of M. tuberculosis phenotype with single cell RNA-seq to interrogate host macrophage heterogeneity in vivo.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	24	CSV RDS TSV SRA Run Selector	Davide Pisu	Apr 28, 2021