GEO Browser - GEO

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1369 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing			SRA Run Selector
GSE109262	Joint profiling of chromatin accessibility, DNA methylation and transcription in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	synthetic construct Mus musculus	244	TSV TXT SRA Run Selector	Felix Krueger	Jan 17, 2018
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning	Genome binding/occupancy profiling by high throughput sequencing	Sus scrofa domesticus Mus musculus Homo sapiens Equus caballus Danio rerio Canis lupus familiaris	23	BW SRA Run Selector	Stein Aerts	Apr 22, 2020
GSE129380	An evolutionarily conserved function of polycomb silences the MHC class I antigen presentation pathway and enables immune evasion in cancer [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Sarcophilus harrisii Mus musculus Homo sapiens	24	BROADPEAK NARROWPEAK SRA Run Selector	Mark Dawson	Sep 28, 2019
GSE108948	Fine Resolution Mapping of TF binding and Chromatin Interactions	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus	12	BW CSV SRA Run Selector	Nir Friedman	Mar 06, 2018
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae Mus musculus Homo sapiens Drosophila melanogaster	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE155658	Postnatal development of Cardiomyocyte	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus rattus Mus musculus	115	BEDGRAPH TXT XLSX SRA Run Selector	Li Wang	May 29, 2022
GSE78688	Activity-dependent transcriptional changes in human neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus Homo sapiens	43	BW SRA Run Selector	Bulent Ataman	Nov 02, 2016
GSE112622	LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus	10	BW SRA Run Selector	Matthew C Lorincz	Jul 06, 2018
GSE165655	Histone modification profile in animal models of neurodevelopmental disorders treated with TAK-418	Genome binding/occupancy profiling by high throughput sequencing	Rattus norvegicus Mus musculus	74	TXT SRA Run Selector	Satoru Matsuda	Jan 29, 2021
GSE111930	An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Pan troglodytes Mus musculus Macaca mulatta Homo sapiens Gorilla gorilla	60	BW HIC TDF TXT SRA Run Selector	Lei Tian	Aug 11, 2020
GSE56526	BRD4 dynamics reveal novel acrosome-dependent chromatin reorganization during post-meiotic mammalian sperm development	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED BW SRA Run Selector	Gregory Donahue	Mar 06, 2015
GSE58108	Rlf, a widely-spaced zinc finger protein, is involved in maintaining epigenetic marks at CpG island shores and enhancer elements across the genome	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	22	BW TAB SRA Run Selector	Harald Oey	Mar 24, 2015
GSE59176	Prevalent p53 gain-of-function mutants co-opt epigenetic pathways to drive cancer growth	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus Homo sapiens	15	BEDGRAPH BW TXT SRA Run Selector	Morgan Sammons	Jul 31, 2015
GSE60604	An alternative pluripotent state confers interspecies chimaeric competency [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Homo sapiens	12	BIGWIG SRA Run Selector	Christopher Benner	May 06, 2015
GSE61673	Nkx2.2, Nkx6.1, Olig2, and Gli3 genomic binding regions in neural progenitors [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	13	BED TXT SRA Run Selector	Yuichi Nishi	Aug 24, 2015
GSE64825	Genome-wide distribution and function of ATP-dependent chromatin remodelers in embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	44	BEDGRAPH BW WIG SRA Run Selector	Matthieu GERARD	Jan 26, 2016
GSE65167	ChIP-seq analysis of Arid1a and C/ebpα in the mouse livers	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	21	BED BIGWIG BROADPEAK SRA Run Selector	Xuxu Sun	Mar 30, 2016
GSE65360	Single-cell chromatin accessibility data using scATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Homo sapiens	1632	BED SRA Run Selector	Jason Daniel Buenrostro	Jun 17, 2015
GSE66364	PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	20	BED BW CSV SRA Run Selector	Philippe Collas	Mar 06, 2017
GSE67852	Genome-wide maps of BAF180 and REV-ERBα binding	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BIGWIG BW SRA Run Selector	Bokai Zhu	Dec 07, 2015