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20 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing			RDS
GSE229513	Symmetry breaking in gastruloid development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BIGWIG H5 MTX RDS RTF TBI TSV TXT	Nadim Aizarani	Apr 29, 2023
GSE183764	9sCa: MSL2 is an allelic dosage sensor in mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Methylation profiling by high throughput sequencing	Mus musculus	244	BED BEDPE BW RDATA RDS TSV TXT SRA Run Selector	Asifa Akhtar	Aug 10, 2023
GSE189502	Mutant-SETBP1 activates transcription of Myc programs to accelerate CSF3R-driven myeloproliferative neoplasms	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	56	BED BW CSV RDS TSV TXT	Sarah Ann Carratt	May 11, 2022
GSE199499	Single-cell chromatin accessibility profiling reveals a self-renewing muscle satellite cell state	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	ARROW FPKM_TRACKING RDS	Yarui Diao	Jun 18, 2023
GSE232662	Mild dehydration effects on the murine kidney single nucleus transcriptome and chromatin accessibility	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	RDS XLSX	Kelly Anne Hyndman	Oct 13, 2023
GSE167454	Neural tube closure defect: Single Cell ATAC and single cell mRNA seq	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED MTX RDS TSV SRA Run Selector	Rachel Keuls	Feb 24, 2021
GSE216136	Post-transcriptional regulation in cranial neural crest cells expands developmental potential [II]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	BED MTX RDS TSV	Rachel Keuls	Oct 25, 2022
GSE216138	Post-transcriptional regulation in cranial neural crest cells expands developmental potential	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BED MTX RDS TSV	Rachel Keuls	Oct 25, 2022
GSE231779	Spatial enhancer activation influences inhibitory neuron identity during mouse embryonic development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BW CSV NARROWPEAK RDS	Christian Mayer	Feb 19, 2024
GSE153331	Astrocyte Reactivity and Cognitive Decline Follow Chronic Heterochromatin Loss in Neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	71	BEDGRAPH BW COV CSV RDS TXT SRA Run Selector	Andrew Newman	Jan 10, 2024
GSE224563	DNA methylation in the mouse cochlea promotes maturation of supporting cells and contributes to the failure of hair cell regeneration	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	52	BED BW COV H5 H5SEURAT MTX RDS TSV	John Duc Nguyen	Feb 07, 2023
GSE151408	Erythrophagocytosis drives anti-inflammatory programming of liver macrophages (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	CSV H5 RDS TBI TSV SRA Run Selector	Marc Pfefferle	Aug 13, 2020
GSE161374	Addiction-associated genetic variants implicate brain cell type- and region-specific cis-regulatory elements in addiction neurobiology	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	35	BW NARROWPEAK RDS SRA Run Selector	BaDoi Nguyen Phan	Jul 13, 2021
GSE167232	Integration of M. tuberculosis phenotype with single cell RNA-seq to interrogate host macrophage heterogeneity in vivo.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	24	CSV RDS TSV SRA Run Selector	Davide Pisu	Apr 28, 2021
GSE201402	mouse retina 10x Genomics Multiome ATAC+RNA data	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	2	RDS	Katy Rezvani	May 02, 2022
GSE191064	Single-cell chromatin accessibility and lipid profiling reveals SCD1-dependent metabolic shift in adipocytes induced by bariatric surgery	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED RDS TXT	Paul D. Soloway	Dec 20, 2021
GSE156245	Map3k2-regulated intestinal stromal cells define a distinct intestine stem cell niche for tissue repair	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	21	BED BW MTX RDS TSV XLSX SRA Run Selector	Hongxiang Sun	Aug 15, 2020
GSE214845	Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	150	BIGWIG BW MTX NARROWPEAK RDS TSV TXT	Bernard Klaas van der Veer	Apr 12, 2023
GSE214675	NF-kB and Circadian Enhancers Link β-cell Function with Anti-IL1B Therapy [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	8	CSV H5 RDS TSV	Benjamin J Weidemann	Apr 03, 2023
GSE150638	Muscle progenitor specification and myogenic differentiation are associated with changes in chromatin topology.	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	26	BIGWIG NARROWPEAK RDS TXT SRA Run Selector	Nan Zhang	Oct 31, 2020