GEO Browser - GEO

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334 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057	Genome binding/occupancy profiling by high throughput sequencing			NARROWPEAK
GSE213970	Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BAM NARROWPEAK	Mark O. Huising	Jan 19, 2023
GSE146292	Stepwise chromatin and transcriptional acquisition of an intraepithelial lymphocyte program	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	40	BB BED BIGWIG H5 MTX NARROWPEAK TSV SRA Run Selector	Tiago Castro	Jan 04, 2021
GSE247320	Histone methyltransferase Ezh2 coordinates mammalian axon regeneration via regulation of key regenerative pathways	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	38	BB NARROWPEAK	Xuewei Wang	Dec 22, 2023
GSE73692	Genome-wide mapping of PRDM15 binding in pluripotent mouse Embryonic Stem Cells (mESCs)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	BED BW NARROWPEAK SRA Run Selector	Jingxian Zhang	Jul 24, 2017
GSE85185	YY1 and CTCF Orchestrate a 3D Chromatin Looping Switch during Early Neural Lineage Commitment	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED NARROWPEAK TXT SRA Run Selector	Jennifer E Phillips-Cremins	May 22, 2017
GSE98119	The energetics and physiological impact of cohesin extrusion	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	352	BED BEDGRAPH BW HIC NARROWPEAK TXT SRA Run Selector	Seolkyoung Jung	May 01, 2018
GSE111009	Cell type-dependent control of enhancer and p53 transcriptional activity by p63	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	98	BED BEDGRAPH BW NARROWPEAK TXT SRA Run Selector	Morgan A Sammons	Feb 11, 2019
GSE117729	A novel role for the conserved, orphan deaminase APOBEC2 [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED BW NARROWPEAK SRA Run Selector	Nina Papavasiliou	Jul 26, 2021
GSE117732	A novel role for the conserved, orphan deaminase APOBEC2	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	56	BED BW NARROWPEAK TXT WIG	Nina Papavasiliou	Jul 26, 2021
GSE119784	Mitotic chromosome binding predicts transcription factor properties in interphase	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	60	BED BW NARROWPEAK	David Michael Suter	Jan 25, 2019
GSE129997	Re-configuration of Chromatin Structure During the Mitosis-G1 Phase Progression	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	75	BED BEDGRAPH BW NARROWPEAK TSV SRA Run Selector	Gerd A Blobel	Nov 27, 2019
GSE131926	Dynamic Lineage Priming by ERK is Driven by Transcription Factor-Independent Enhancer Regulation [Mediator ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED NARROWPEAK SRA Run Selector	Josh M Brickman	Aug 08, 2019
GSE132444	Dynamic Lineage Priming by ERK is Driven by Transcription Factor-Independent Enhancer Regulation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	220	BED NARROWPEAK TXT	Josh M Brickman	Aug 08, 2019
GSE133409	A Congenital Anemia Dissociates the Pleiotropic Functions of Master Transcription Factor GATA1 [G1E_ChIPseq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	9	BED BW NARROWPEAK TSV SRA Run Selector	Caleb Lareau	Dec 31, 2021
GSE134796	Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells (ATAC-seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED BEDGRAPH NARROWPEAK SRA Run Selector	Jose Manuel Garcia-Manteiga	Jul 07, 2020
GSE134798	Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Homo sapiens Mus musculus	34	BED BEDGRAPH NARROWPEAK	Jose Manuel Garcia-Manteiga	Jul 07, 2020
GSE137193	ChIP-nexus data for Oct4, Sox2, Nanog and Klf4 in mouse embryonic stem cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BIGWIG BW NARROWPEAK SRA Run Selector	Julia Zeitlinger	Nov 21, 2020
GSE145333	SPOP mutation reshapes chromatin landscape and transcriptional response to androgens.	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	78	BED BW NARROWPEAK	Ivana Grbesa	Sep 09, 2021
GSE151013	Mechanistic dissection of dominant AIRE mutations in mouse models reveals evidence for AIRE auto-regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	102	BED BROADPEAK NARROWPEAK	Jakub Abramson	Aug 30, 2021
GSE151823	RUNX2 is a dependency factor in immature and KMT2A-rearranged T-cell acute lymphoblastic leukemia	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	54	BED NARROWPEAK	Filip Matthijssens	Jun 05, 2020