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70 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Genome binding/occupancy profiling by high throughput sequencing			SRA Run Selector
GSE62151	Upstream Anti-sense Promoters Act as Local Enhancers of Mammalian Protein-coding Genes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	17	BEDGRAPH BW WIG SRA Run Selector	Karen Adelman	Jun 23, 2015
GSE142289	Induction of Recurrent Break Cluster Genes in Neural Progenitor Cells Differentiated from Embryonic Stem Cells In Culture [HTGTS-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	104	TXT SRA Run Selector	Frederick W Alt	Jan 13, 2020
GSE43247	ChIP-seq analysis of PHF20 and Wdr5 binding sites in ESCs	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED SRA Run Selector	Stephen D Ayers	Dec 06, 2013
GSE97148	Clonally stable Vκ allelic choice instructs Igκ repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BEDGRAPH TXT SRA Run Selector	Yehudit Bergman	Apr 01, 2017
GSE64749	Chromatin interaction analysis of transcription factors and NLRP3 in CD4+ T cells differentiated from wild-type and NLRP3KO mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Romain Boidot	May 12, 2015
GSE64365	Degree of Recruitment of DOT1L to MLL-AF9 Defines Level of H3K79 Di- and Tri-methylation on Target Genes and Transformation Potential	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	TXT SRA Run Selector	John H Bushweller	Apr 30, 2015
GSE140975	Wapl repression by Pax5 promotes loop extrusion and V gene recombination at the Igh locus	Other Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	170	BED BEDGRAPH BW HIC TXT SRA Run Selector	Meinrad Busslinger	Jul 01, 2020
GSE95826	Tcrd rearrangement redirects a processive Tcra recombination program to expand the Tcra repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BEDGRAPH TXT SRA Run Selector	Zachary Carico	Jun 06, 2017
GSE58101	High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BW TXT SRA Run Selector	Benjamin R Carone	Jul 08, 2014
GSE116784	Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BEDGRAPH SRA Run Selector	Shinichiro Chuma	Feb 06, 2020
GSE139677	Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice [ChIP-seq II]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDGRAPH SRA Run Selector	Shinichiro Chuma	Feb 06, 2020
GSE80280	3D structures of individual mammalian genomes reveal principles of nuclear organization	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED HDF5 PDB TSV TXT XYZ SRA Run Selector	Andre J Faure	Mar 07, 2017
GSE84761	Inactivation of Ezh2 upregulates Gfi1 and drives aggressive Myc-driven Group 3 medulloblastoma [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED SRA Run Selector	David Finkelstein	Mar 01, 2017
GSE67516	A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED BW TXT XLS XLSX SRA Run Selector	John Edward Froberg	Jun 19, 2015
GSE116649	Megadomains and superloops form dynamically during X-chromosome inactivation but are dispensable for silencing and escape	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	65	BED BEDGRAPH BW HIC XLS XLSX SRA Run Selector	John Edward Froberg	Oct 31, 2018
GSE80105	Synergistic model of chromatin predicts Dnase-I accessibility	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TAR TSV TXT SRA Run Selector	David Gifford	Jul 20, 2016
GSE81255	Nfib promotes Metastasis through a Widespread Increase in Chromatin Accessibility [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	BED BROADPEAK BW CSV SRA Run Selector	William Greenleaf	May 10, 2016
GSE84888	Distinct roles for motif affinity, chromatin state, and co-regulatory motifs in PPARγ binding and enhancer activity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus synthetic construct	21	TXT SRA Run Selector	Sharon R Grossman	Feb 03, 2017
GSE143266	An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BROADPEAK BW SRA Run Selector	Ross Hardison	Jan 09, 2020
GSE159503	Effects of sheared chromatin length on ChIP-seq quality and sensitivity	Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Mus musculus	65	BROADPEAK BW XLSX SRA Run Selector	Ross Hardison	Oct 14, 2020