GEO Browser - GEO

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70 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Genome binding/occupancy profiling by high throughput sequencing			SRA Run Selector
GSE36114	Genome-wide analysis of histone modification, protein-DNA binding, cytosine methylation and transcriptome data in mouse and human ES cells and pig iPS cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus Sus scrofa	47	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Feb 28, 2012
GSE38596	Genome-wide maps of cytosine methylation, cytosine hydroxylmethylation and small non coding RNAs in mouse ES cells and upon guided differentiation to mesoendoderm cells	Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	36	BAM BED GTF TXT SRA Run Selector	Pengfei Yu	Sep 22, 2012
GSE43247	ChIP-seq analysis of PHF20 and Wdr5 binding sites in ESCs	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	BED SRA Run Selector	Stephen D Ayers	Dec 06, 2013
GSE46748	Obesity, rather than diet, drives epigenomic alterations in colonic epithelium resembling cancer progression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BEDGRAPH SRA Run Selector	ruifang li	Jan 16, 2014
GSE54863	FIREWACh: High-throughput Functional Detection of Transcriptional Regulatory Modules in Mammalian Cells	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED SRA Run Selector	Matthew Murtha	Mar 22, 2014
GSE49137	INO80 complex in the core regulatory network governing ESC self-renewal [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED BW SRA Run Selector	Li Wang	May 16, 2014
GSE58101	High-resolution mapping of chromatin packaging in mouse embryonic stem cells and sperm	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BW TXT SRA Run Selector	Benjamin R Carone	Jul 08, 2014
GSE61247	ChIP-seq profiling of loci bound by HIF1a in wild-type E12.5 hearts	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	3	BED SRA Run Selector	Alexander C Zambon	Apr 29, 2015
GSE64365	Degree of Recruitment of DOT1L to MLL-AF9 Defines Level of H3K79 Di- and Tri-methylation on Target Genes and Transformation Potential	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	TXT SRA Run Selector	John H Bushweller	Apr 30, 2015
GSE64749	Chromatin interaction analysis of transcription factors and NLRP3 in CD4+ T cells differentiated from wild-type and NLRP3KO mice	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED SRA Run Selector	Romain Boidot	May 12, 2015
GSE50776	c-Jun impedes somatic cell reprogramming by activating mesenchymal core regulators and suppressing pluripotent ones	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	16	TXT XLS SRA Run Selector	Lihui Lin	Jun 10, 2015
GSE67516	A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	42	BED BW TXT XLS XLSX SRA Run Selector	John Edward Froberg	Jun 19, 2015
GSE62151	Upstream Anti-sense Promoters Act as Local Enhancers of Mammalian Protein-coding Genes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	17	BEDGRAPH BW WIG SRA Run Selector	Karen Adelman	Jun 23, 2015
GSE73225	SOX9 modulates the expression of key transcription factors required for heart valve development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	5	BED TXT SRA Run Selector	Pamela A. Hoodless	Nov 05, 2015
GSE71883	Dzip3 regulates developmental genes in mouse embryonic stem cells by reorganizing 3D chromatin conformation [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	TXT SRA Run Selector	Daishi Inoue	Dec 08, 2015
GSE72897	EWS-FLI1-induced osteosarcoma model unveiled a crucial role of impaired osteogenic differentiation on osteosarcoma development [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	2	BED SRA Run Selector	Yasuhiro Yamada	Mar 01, 2016
GSE71863	Whole genome nucleosome positioning by MNase-Seq on the mouse tumor line, RMA	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED SRA Run Selector	Andrew Makrigiannis	Apr 28, 2016
GSE81255	Nfib promotes Metastasis through a Widespread Increase in Chromatin Accessibility [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	67	BED BROADPEAK BW CSV SRA Run Selector	William Greenleaf	May 10, 2016
GSE80105	Synergistic model of chromatin predicts Dnase-I accessibility	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	8	TAR TSV TXT SRA Run Selector	David Gifford	Jul 20, 2016
GSE82255	Destabilization of B2 RNA by EZH2 activates the stress response	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Mus musculus	61	BED BW TXT SRA Run Selector	Athanasios Zovoilis	Dec 19, 2016