GEO Browser - GEO

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29 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Genome binding/occupancy profiling by high throughput sequencing			BIGWIG
GSE196486	Exploring the binding motif in genome wide for p53, Pygo2 and H3K4-Me3 in mouse (Pten/Smad4 KO) PS cell line	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BIGWIG	Xin Lu Lu	Dec 23, 2022
GSE240072	Identification of GLIS3 and HNF1b target genes in kidney	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BED BIGWIG	Hong Soon Kang	Dec 31, 2023
GSE104811	Genome-wide mapping of H3K79me2 in EPZ5676-treated lymphatic endothelial cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	6	BIGWIG TXT	Chanhyeok Park	Oct 10, 2018
GSE130388	NFIA differentially controls adipogenic and myogenic gene program through distinct pathways to ensure adipocyte differentiation [chromatin]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BIGWIG SRA Run Selector	Hironori Waki	Sep 22, 2020
GSE200192	NFIA in adipocytes reciprocally regulates mitochondrial and inflammatory gene program to improve glucose homeostasis [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BIGWIG	Yuta Hiraike	Jul 25, 2023
GSE202791	ATAC-seq Optimization for Cancer Cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	6	BED BIGWIG	Archana Dhasarathy	May 14, 2022
GSE225658	Hnf4 controls gut and liver gene programs in the thymus [CUT&Tag]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BIGWIG	CBDM Lab	Jun 26, 2023
GSE98726	Transcriptional Regulation by NFATc1 in CD8+ T cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	11	BIGWIG TXT	Stefan Klein-Hessling	Jul 03, 2017
GSE166123	Epigenetic dysregulation impairs high-fidelity DNA repair to promote cerebellar degeneration in spinocerebellar ataxia type 7	Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED BIGWIG TXT	Pawel Michal Switonski	Feb 04, 2021
GSE211864	Probing cell identity hierarchies by fate titration and collision during direct reprogramming	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	16	BED BIGWIG BROADPEAK H5 LOOM TSV	Bob Hersbach	Sep 16, 2022
GSE194231	Thymic epithelial cells co-opt lineage-defining transcription factors to eliminate autoreactive T cells [CUT&TAG]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	19	BIGWIG	CBDM Lab	Jun 16, 2022
GSE207777	Glis3 regulates the expression of thyroid hormone synthetic genes in coordination with other thyroid transcription factors	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Rattus norvegicus	21	BED BIGWIG	Hong Soon Kang	Apr 06, 2023
GSE92597	Aire, guardian of immunological tolerance, binds to and activates super-enhancers [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BIGWIG SRA Run Selector	CBDM Lab	Jan 22, 2017
GSE83757	NFIA Controls the Brown Fat Gene Program by Co-Localizing with PPARgamma at Cell-Type-Specific Enhancers (chromatin)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BEDGRAPH BIGWIG SRA Run Selector	Hironori Waki	Aug 14, 2017
GSE256231	Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq [Mouse KAS-ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BED BIGWIG	Ruitu Lyu	Jun 21, 2024
GSE103543	Internally Calibrated ChIP-seq (ICeChIP-seq) using a large panel of antibodies against H3K4 methylations to measure genome-wide histone modification density in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	25	BED BEDGRAPH BIGWIG FA TXT SRA Run Selector	Rohan Nishant Shah	Sep 20, 2018
GSE256229	Quantitative analysis of cis-regulatory elements in transcription with KAS-ATAC-seq [Mouse KAS-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	26	BED BIGWIG	Ruitu Lyu	Jun 21, 2024
GSE136650	Induction of autoreactive regulatory T cells through promiscuous gene expression by bone marrow-resident Aire+ antigen-presenting cells	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Mus musculus	33	BED BIGWIG TXT	Philipp Beckhove	Aug 26, 2022
GSE236182	Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	BEDGRAPH BEDPE BIGWIG BW HIC TXT WIG	Sergio Niñerola	Dec 04, 2023
GSE83764	NFIA Controls the Brown Fat Gene Program by Co-Localizing with PPARgamma at Cell-Type-Specific Enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	48	BIGWIG TXT	Hironori Waki	Aug 14, 2017