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25 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL16417	Genome binding/occupancy profiling by high throughput sequencing			BEDGRAPH
GSE62151	Upstream Anti-sense Promoters Act as Local Enhancers of Mammalian Protein-coding Genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BEDGRAPH BW WIG SRA Run Selector	Karen Adelman	Jun 23, 2015
GSE95826	Tcrd rearrangement redirects a processive Tcra recombination program to expand the Tcra repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	28	BEDGRAPH TXT SRA Run Selector	Zachary Carico	Jun 06, 2017
GSE97148	Clonally stable Vκ allelic choice instructs Igκ repertoire	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	32	BEDGRAPH TXT SRA Run Selector	Yehudit Bergman	Apr 01, 2017
GSE116649	Megadomains and superloops form dynamically during X-chromosome inactivation but are dispensable for silencing and escape	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	65	BED BEDGRAPH BW HIC XLS XLSX SRA Run Selector	John Edward Froberg	Oct 31, 2018
GSE116798	Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	23	BEDGRAPH FPKM_TRACKING	Shinichiro Chuma	Feb 06, 2020
GSE121355	A pliable mediator acts as a functional, rather than an architectural bridge, between promoters and enhancers	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	201	BEDGRAPH BW HIC TXT SRA Run Selector	Seolkyoung Jung	Aug 01, 2019
GSE124596	A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	56	BED BEDGRAPH BW CSV TXT SRA Run Selector	Nicolas Servant	Dec 01, 2019
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE130270	Chromatin Loop Extrusion Plays a Fundamental Mechanistic Role in Antibody Class Switching	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Mus musculus	149	BEDGRAPH BROADPEAK BW TXT	Frederick W Alt	Sep 25, 2019
GSE140975	Wapl repression by Pax5 promotes loop extrusion and V gene recombination at the Igh locus	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	170	BED BEDGRAPH BW HIC TXT SRA Run Selector	Meinrad Busslinger	Jul 01, 2020
GSE184490	Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Mus musculus	132	BED BEDGRAPH TXT SRA Run Selector	Dominic Owens	Dec 16, 2021
GSE230286	Id3 is required for the maintenance of tissue-infiltrating alloreactive T cells in GVHD but not anti-leukemia responses	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	40	BEDGRAPH H5	Ying Wang	Jan 24, 2024
GSE236182	Kdm1a safeguards the topological boundaries of PRC2-repressed genes and prevents aging-related euchromatinization in neurons	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Mus musculus	37	BEDGRAPH BEDPE BIGWIG BW HIC TXT WIG	Sergio Niñerola	Dec 04, 2023
GSE242974	The role of SMC3 in heart development by regulating super-enhancer associated genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	35	BED BEDGRAPH BW MTX TSV XLS XLSX	bowen zhang	Sep 14, 2023
GSE46748	Obesity, rather than diet, drives epigenomic alterations in colonic epithelium resembling cancer progression	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	18	BED BEDGRAPH SRA Run Selector	ruifang li	Jan 16, 2014
GSE83757	NFIA Controls the Brown Fat Gene Program by Co-Localizing with PPARgamma at Cell-Type-Specific Enhancers (chromatin)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	24	BEDGRAPH BIGWIG SRA Run Selector	Hironori Waki	Aug 14, 2017
GSE103543	Internally Calibrated ChIP-seq (ICeChIP-seq) using a large panel of antibodies against H3K4 methylations to measure genome-wide histone modification density in mammalian cells	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	25	BED BEDGRAPH BIGWIG FA TXT SRA Run Selector	Rohan Nishant Shah	Sep 20, 2018
GSE116784	Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BEDGRAPH SRA Run Selector	Shinichiro Chuma	Feb 06, 2020
GSE134749	Genome-wide CUT&RUN sequencing of H3K27me3 mark across different stages of T-cell development.	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	6	BEDGRAPH SRA Run Selector	Nicholas Pease	Jul 24, 2019
GSE139677	Transcriptomic and epigenetic profiling of genome control in the germline stem cell cycle in mice [ChIP-seq II]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDGRAPH SRA Run Selector	Shinichiro Chuma	Feb 06, 2020