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265 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome binding/occupancy profiling by genome tiling array			GFF
GSE18457	ChIP-chip from HCT116 cells treated with MMS and LNCaP cells with ATF3	Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Homo sapiens	10	BAR BED GFF PAIR PDF TXT XLS	Yujiro Tanaka	Oct 01, 2010
GSE23537	modENCODE_White Lab: genome-wide ChIP-chip and ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster Drosophila pseudoobscura Drosophila simulans Drosophila yakuba	247	BAR BED BEDGRAPH CEL GFF WIG SRA Run Selector	Kevin P. White	Aug 11, 2010
GSE15884	High resolution analysis of epigenetic changes associated with X inactivation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array	Mus musculus	58	BED GFF TXT WIG	H.G. Stunnenberg	Jun 06, 2009
GSE24382	Lamin binding profiles in the ENCODE regions	Genome binding/occupancy profiling by genome tiling array	Homo sapiens	6	BED GFF	Ghia Euskirchen	Jan 10, 2011
GSE24398	Diverse roles and interactions of the SWI/SNF chromatin-remodeling complex revealed using global approaches	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Homo sapiens	10	BED GFF	Ghia Euskirchen	Jan 10, 2011
GSE25933	Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by genome tiling array	Caenorhabditis elegans	31	BED GFF GFF3 PAIR SAM TXT WIG	DCC modENCODE	Dec 22, 2010
GSE28115	CBX3 Regulates Efficient RNA Processing Genome Wide	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	39	BED BEDGRAPH GFF GPR PAIR SRA Run Selector	Bing Ren	May 24, 2012
GSE30761	Mammalian X upregulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Mus musculus Mus musculus x Mus spretus	60	BED BIGWIG CEL GFF PAIR TXT	Xinxian Deng	Jul 19, 2011
GSE50769	Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol)	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster	13	BED GFF PAIR TXT	Chin-Tong Ong	Sep 15, 2013
GSE52349	The nucleosomal barrier to promoter escape by RNA Polymerase II is overcome by the chromatin remodeler Chd1	Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	BED BEDGRAPH GFF PAIR WIG	Jorja Henikoff	Apr 15, 2014
GSE4091	Histone turnover mediates epigenetic processes in Drosophila S2 cells	Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster	6	BEDGRAPH GFF	Jorja Henikoff	Dec 01, 2007
GSE6234	Histone turnover marks the boundaries of cis-regulatory domains	Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster	11	BEDGRAPH GFF	Jorja Henikoff	Mar 01, 2007
GSE13217	Genome-wide profiling of salt fractions maps physical properties of chromatin	Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster	47	BEDGRAPH CEL GFF PAIR TXT	Jorja Henikoff	Dec 12, 2008
GSE18898	A native chromatin purification system for epigenomic profiling in C. elegans	Genome binding/occupancy profiling by genome tiling array	Caenorhabditis elegans	18	BEDGRAPH GFF PAIR TXT	Jorja Henikoff	Dec 08, 2009
GSE19654	INTACT method for gene expression and chromatin profiling of individual cell types within a tissue	Genome binding/occupancy profiling by genome tiling array Expression profiling by genome tiling array	Arabidopsis thaliana	16	BEDGRAPH DAT GFF PAIR PDF	Jorja Henikoff	Jun 14, 2010
GSE19788	CATCH-IT method for measuring nucleosome turnover	Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster	12	BEDGRAPH GFF PAIR PDF	Jorja Henikoff	May 27, 2010
GSE19884	Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis	Expression profiling by genome tiling array Methylation profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array	Mus musculus	20	BEDGRAPH CALLS GFF PAIR	Jorja Henikoff	Aug 09, 2010
GSE21416	Baculovirus-encoded protein expression for epigenomic profiling in Drosophila cells	Genome binding/occupancy profiling by genome tiling array	Drosophila melanogaster	2	BEDGRAPH GFF PAIR TXT	Jorja Henikoff	Jul 12, 2010
GSE30706	Budding yeast mRNA export and processing factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae	9	BEDGRAPH GFF PAIR	David L. Bentley	Sep 25, 2011
GSE46954	Default DNA Methylation is Preceded by Broad, Low-Level Transcription in Fetal Male Germ Cells and Is Inversely Patterned by Dynamic H3K4 Methylation	Genome binding/occupancy profiling by genome tiling array Methylation profiling by genome tiling array Expression profiling by high throughput sequencing	Mus musculus	63	BEDGRAPH GFF PAIR TXT	Xiwei Wu	Jul 31, 2013