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338 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter		Genome variation profiling by high throughput sequencing
GSE27994	Expressed sequences and polymorphisms in rohu carp (Labeo rohita, Hamilton) revealed by mRNA-seq	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Other	Labeo rohita	2	BAM FASTA	Matthew Baranski	Jan 01, 2013
GSE29184	A draft map of cis-regulatory sequences in the mouse genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Mus musculus	143	BAM BIGWIG BOWTIE TXT	Bing Ren	Jul 01, 2012
GSE30833	Genome Sequencing of Gastric Cancer Reveals Diverse Mutational and Pathogen Signatures	Genome variation profiling by high throughput sequencing	Homo sapiens	8	BAM GFF TXT SRA Run Selector	Axel HILLMER	Dec 05, 2012
GSE31407	Drosophila DrosDel deficiency and diploid control flies	Expression profiling by array Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Drosophila melanogaster	203	BAM PAIR SAM	Brian Oliver	Apr 03, 2012
GSE31550	DNA-Seq of DrosDel deficiency lines and w1118 lines	Genome variation profiling by high throughput sequencing	Drosophila melanogaster	44	BAM SRA Run Selector	Brian Oliver	Apr 03, 2012
GSE22657	High-throughput semi-quantitative analysis of insertional mutations in heterogeneous tumors	Genome variation profiling by high throughput sequencing	Mus musculus	453	BED TXT SRA Run Selector	Jos Jonkers	Aug 12, 2011
GSE31388	Variation in chromatin accessibility is a key determinant of heritable variation in gene expression	Genome variation profiling by high throughput sequencing	Homo sapiens	70	BED PDF TXT SRA Run Selector	Jacob F Degner	Jan 26, 2012
GSE36203	Architectural protein subclasses shape 3-D organization of genomes during lineage commitment	Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	7	BED TXT SRA Run Selector	Jennifer Elizabeth Phillips-Cremins	May 24, 2013
GSE41729	Transcriptional silencing of transposable elements by Piwi and its impact on chromatin and gene expression	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Drosophila melanogaster	32	BED BW SRA Run Selector	Grzegorz Sienski	Nov 26, 2012
GSE48493	Supression of genetic recombination in the pseudoautosomal region and at subtelomeres in mice with a hypomorphic spo11 allele	Genome variation profiling by high throughput sequencing Other	Mus musculus	9	BED BEDGRAPH SRA Run Selector	Kevin Brick	Sep 11, 2013
GSE73130	Mutation of cancer driver MLL2 results in transcription stress and genome instability	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	62	BED RPKM	Theo Kantidakis	Apr 13, 2016
GSE81233	Single Cell DNA Methylome Sequencing of Human Preimplantation Embryos	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	673	BED FPKM_TRACKING TXT SRA Run Selector	Hongshan Guo	Dec 19, 2017
GSE87424	Enhancer Remodeling During Adaptive Bypass to MEK Inhibition Is Attenuated by Pharmacological Targeting of the P-TEFb Complex	Methylation profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	167	BED CSV IDAT TXT XLSX	Gary L Johnson	Jan 20, 2017
GSE100351	The DNA methylation landscape of glioblastoma disease progression shows extensive heterogeneity in time and space	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens	579	BED RPKM TXT	Christoph Bock	Jun 20, 2018
GSE108182	Localization of dimethylated histone three lysine four in the Rattus norvegicus sperm genome	Genome variation profiling by high throughput sequencing	Rattus norvegicus	8	BED SRA Run Selector	Shelby Wilson	Feb 01, 2018
GSE108450	The histone variant H2A.Z and chromatin remodeler BRAHMA act coordinately and antagonistically to regulate transcription and nucleosome dynamics in Arabidopsis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Arabidopsis thaliana	33	BED BW TXT XLS SRA Run Selector	Roger B Deal	Jan 05, 2018
GSE130224	The Fundamental Role of Chromatin Loop Extrusion in Physiological V(D)J Recombination	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Genome variation profiling by high throughput sequencing	Mus musculus	133	BED BEDGRAPH BEDPE BW HIC TXT	Frederick W Alt	Aug 19, 2019
GSE130539	Distruption of TOX and TOX2 transcription factors in CAR T cells limits T cell exhaustion [ATAC-Seq]	Genome variation profiling by high throughput sequencing	Mus musculus	4	BED SRA Run Selector	Anjana Rao	May 31, 2019
GSE135178	DNA copy number measurement of genome replication dynamics by high-throughput sequencing – the sort-seq, sync-seq and MFA-seq family	Genome variation profiling by high throughput sequencing	Saccharomyces cerevisiae	2	BED SRA Run Selector	Conrad A Nieduszynski	Aug 01, 2019
GSE145921	Genomic and transcriptomic analysis of medulloblastoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Homo sapiens Mus musculus	33	BED BW CSV TXT SRA Run Selector	Zaili Luo	Dec 31, 2021