GEO Browser - GEO

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634 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens		TAB
GSE16368	UCSF-UBC Human Reference Epigenome Mapping Project	Genome binding/occupancy profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens	529	BAM BED TAB WIG SRA Run Selector	UCSF-UBC CENTER	Aug 03, 2009
GSE166483	Cataloging human PRDM9 variability utilizing long-read sequencing technologies reveals PRDM9 population-specificity and two distinct groupings of related alleles	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	18	BAM BEDGRAPH BIGWIG TAB TXT SRA Run Selector	Kevin Brick	Oct 26, 2021
GSE41437	The viral and cellular microRNA targetome in lymphoblastoid cell lines	Non-coding RNA profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	11	BED TAB SRA Run Selector	Rebecca L Skalsky	Oct 16, 2012
GSE42608	Whole-transcriptome high-throughput RNA sequencing of blood leukocytes from Parkinson's disease human patients pre- and post-deep brain stimulation	Expression profiling by high throughput sequencing	Homo sapiens	13	BED GFF3 TAB TXT SRA Run Selector	Lilach Soreq	Jul 16, 2014
GSE50676	Landscape and variation of RNA secondary structure across the human transcriptome	Expression profiling by high throughput sequencing Other	Homo sapiens	18	BED TAB TXT SRA Run Selector	Kun Qu	Dec 19, 2013
GSE53215	Genome-wide profiling of histone H3 lysine 27 and lysine 4 trimethylation in multiple myeloma reveals the importance of Polycomb gene targeting and highlights EZH2 as a potential therapeutic target [Seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	16	BED TAB SRA Run Selector	Prasoon Agarwal	Dec 31, 2015
GSE62063	B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	76	BED BW TAB WIG SRA Run Selector	Marei Dose	Dec 04, 2014
GSE69253	Genome-wide profiling of histone H3 lysine 27 and lysine 4 trimethylation in multiple myeloma reveals the importance of Polycomb gene targeting and highlights EZH2 as a potential therapeutic target	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	22	BED CEL TAB	Prasoon Agarwal	Dec 31, 2015
GSE76049	The ultra-sensitive Nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens	98	BED TAB TXT	Rolf Ohlsson	Sep 30, 2019
GSE78040	Reversible methylation of m6Am in the 5′ cap controls mRNA stability	Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	28	BED TAB TXT SRA Run Selector	Jan Mauer	Dec 21, 2016
GSE98483	p63 controls the enhancer landscape during keratinocyte differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	18	BED TAB SRA Run Selector	Jo Huiqing Zhou	Dec 18, 2018
GSE102237	Poly(ADP-ribosyl)ation dependent changes in CTCF-chromatin binding and gene expression in breast cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	18	BED TAB SRA Run Selector	Vladimir B Teif	Aug 11, 2017
GSE110637	T-ALL	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	113	BED TAB XLS	Karen Verboom	Sep 11, 2018
GSE117395	Hominid-specific transposable elements and KRAB-ZFPs facilitate human embryonic genome activation and transcription in naïve hESCs	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	79	BED TAB	Julien Duc	Apr 30, 2019
GSE118514	CRISPR-mediated deletion of prostate cancer risk-associated CTCF loop anchors identifies repressive chromatin loops	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	32	BED GFF NARROWPEAK TAB TXT XLS SRA Run Selector	Yu (Phoebe) Guo	Aug 15, 2018
GSE125555	Principles of Signalling Pathway Modulation for Enhancing Human Naïve Pluripotency Induction	Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	159	BED TAB	Noa Novershtern	Mar 25, 2021
GSE133228	STAG2 promotes CTCF-anchored loop extrusion and cis-promoter and -enhancer interactions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by array	Homo sapiens	336	BED CEL MATRIX TAB	Olivier Delattre	Apr 29, 2021
GSE136889	Epigenomics landscape of colorectal cancer	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	309	BED BEDPE TAB TXT	Ayush T Raman	May 22, 2021
GSE141060	Effect of metformin on mRNA expression, histone modifications, and chromatin accessibility in lung cancer cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	10	BED TAB	Dongho Kim	Nov 27, 2019
GSE141439	Epigenomic reprogramming due to PRC2 functional loss induces an aggressive de-differentiated neural crest-like phenotype in MPNST	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	126	BED BROADPEAK BW TAB	Ayush T Raman	Jun 28, 2021