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12067 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens		BED
GSE43512	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Methylation profiling by high throughput sequencing	Xenopus tropicalis Ornithorhynchus anatinus Mus musculus Homo sapiens Gallus gallus Danio rerio Anolis carolinensis	24	BED SRA Run Selector	David Sims	Jan 22, 2013
GSE125982	Epigenetic homogeneity underlies sperm programming for embryonic transcription	Genome binding/occupancy profiling by high throughput sequencing	Xenopus laevis Homo sapiens	36	BED BROADPEAK NARROWPEAK SRA Run Selector	Angela Simeone	Jun 05, 2020
GSE237051	Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei	Genome binding/occupancy profiling by high throughput sequencing Other	Xenopus laevis Mus musculus Homo sapiens	28	BED BEDGRAPH HIC	Roman R Stocsits	Oct 25, 2023
GSE136703	Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits	Genome binding/occupancy profiling by high throughput sequencing Other	unidentified plasmid Homo sapiens	210	BED BW	Carl G de Boer	Feb 11, 2020
GSE180714	Rewiring of human neurodevelopmental gene regulatory programs by Human Accelerated Regions (HARs)	Other	unidentified plasmid Mus musculus Homo sapiens	14	BED TXT SRA Run Selector	Janet Song	Jul 24, 2021
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Trypanosoma brucei Saccharomyces cerevisiae Plasmodium falciparum Mus musculus Leishmania major Homo sapiens Escherichia coli Drosophila melanogaster Danio rerio Cereibacter sphaeroides Caenorhabditis elegans Arabidopsis thaliana	24	BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018
GSE103165	Global Profiling of hnRNP A2/B1-RNA Interactions on Chromatin Suggests Additional Roles Outside of Splicing	Other	synthetic RNA Homo sapiens	20	BED BW SRA Run Selector	Aaron M Johnson	Aug 20, 2018
GSE247119	Two-motif model illuminates DICER cleavage preferences	Expression profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	synthetic RNA Homo sapiens	37	BED	Truc Cong LE	Nov 07, 2023
GSE51156	Overlapping and distinct functions of CstF64 and CstF64τ in mammalian mRNA 3’ processing	Expression profiling by high throughput sequencing Other	synthetic construct Homo sapiens	5	BED TXT SRA Run Selector	Yongsheng Shi	Sep 30, 2013
GSE52523	Large-scale characterization of DNA binding landscape of eukaryotic C2H2 zinc fingers	Other Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Homo sapiens	734	BED TXT	Hamed S Najafabadi	Feb 17, 2015
GSE62777	Integrative analyses of human reprogramming reveal dynamic nature of induced pluripotency	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Mus musculus Homo sapiens	317	BED TDF TXT	Shannan Ho Sui	Jul 16, 2015
GSE66324	Nitric oxide regulates gene expression in cancers by controlling histone posttranslational modifications	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array Non-coding RNA profiling by array	synthetic construct Homo sapiens	22	BED BW CEL	Douglas David Thomas	Nov 05, 2015
GSE81026	Cis Regulatory Element Scan by Tiling-deletion and Sequencing	Other Genome binding/occupancy profiling by high throughput sequencing	synthetic construct Homo sapiens	23	BED BW PDF TAR SRA Run Selector	Bing Ren	Apr 17, 2017
GSE83780	p53 Regulates Enhancer Accessibility and Activity in Response to DNA Damage	Other	synthetic construct Homo sapiens	16	BED TXT SRA Run Selector	Scott T Younger	Jul 21, 2017
GSE109298	Enzymatic or in vivo installation of propargyl groups in combination with click chemistry enables enrichment and detection of methyltransferase target sites in RNA	Other	synthetic construct Homo sapiens	19	BED SRA Run Selector	Benedikt Sebastian Nilges	Feb 21, 2018
GSE124509	An atlas of single-base-resolution N6-methyl-adenine methylomes redefines RNA demethylase function as suppressors of disruptive RNA methylation	Other	synthetic construct Homo sapiens	86	BED BEDGRAPH TXT SRA Run Selector	Wee Siong Sho Goh	Sep 20, 2019
GSE134311	scRCAT-seq: simultaneously profile RNA TSS and TES at single-cell level	Expression profiling by high throughput sequencing	synthetic construct Mus musculus Homo sapiens	116	BED CSV GTF MTX TSV TXT SRA Run Selector	Jiawei Zhong	Aug 24, 2020
GSE137258	Inhibition of YTHDF2 triggers proteotoxic cell death in MYC-driven breast cancer	Expression profiling by high throughput sequencing Other	synthetic construct Homo sapiens	74	BED BED12 BW TXT SRA Run Selector	Gene Yeo	Jul 02, 2021
GSE139417	Functional enhancers shape extrachromosomal oncogene amplifications	Genome binding/occupancy profiling by high throughput sequencing Other	synthetic construct Homo sapiens	20	BED BW TXT	Peter Scacheri	Nov 25, 2019
GSE163477	Hovlinc is a recently evolved class of ribozyme found in human lncRNA	Other	synthetic construct Homo sapiens	10	BED BEDGRAPH SRA Run Selector	Fei Qi	Dec 19, 2020