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11969 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens		BED
GSE43512	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Methylation profiling by high throughput sequencing	Anolis carolinensis Danio rerio Gallus gallus Homo sapiens Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	24	BED SRA Run Selector	David Sims	Jan 22, 2013
GSE66224	Chemical modifications mark alternatively spliced and actively degrading messenger RNAs in Arabidopsis and humans	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Arabidopsis thaliana Homo sapiens	12	BED SRA Run Selector	Lee Elliott Vandivier	Oct 31, 2015
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Arabidopsis thaliana Caenorhabditis elegans Cereibacter sphaeroides Danio rerio Drosophila melanogaster Escherichia coli Homo sapiens Leishmania major Mus musculus Plasmodium falciparum Saccharomyces cerevisiae Trypanosoma brucei	24	BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018
GSE59801	Comparative epigenomics of human and mouse erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Austrofundulus limnaeus Homo sapiens Mus musculus		BED BW TXT	Vijay G Sankaran	Dec 01, 2014
GSE47843	Sequencing and genome-wide mapping of 146 bp mono-nucleosomal DNA from human and bovine sperm	Genome binding/occupancy profiling by high throughput sequencing	Bos taurus Homo sapiens	4	BED SRA Run Selector	Birgit Samans	Jul 08, 2014
GSE74026	Differential DNA Methylation Analysis without a Reference Genome	Methylation profiling by high throughput sequencing	Bos taurus Cyprinus carpio Homo sapiens	44	BED FA SRA Run Selector	Christoph Bock	Dec 03, 2015
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25	BED HDF5 XLS SRA Run Selector	Mengnan He	Apr 12, 2022
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	BED HDF5 XLS	Mengnan He	Apr 12, 2022
GSE268050	Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample	Other Third-party reanalysis	Bos taurus Elephas maximus indicus Equus asinus Homo sapiens Mammuthus primigenius	136	BED BEDGRAPH BEDPE FASTA HIC SW TXT XLSX	Olga Dudchenko	May 22, 2024
GSE30198	Digital gene expression and global mapping of polyadenylation sites with PolyA-Seq	Expression profiling by high throughput sequencing	Canis lupus familiaris Homo sapiens Macaca mulatta Mus musculus Rattus norvegicus	26	BED SRA Run Selector	Adnan Derti	Jun 25, 2011
GSE149679	Comparative analysis of genome-wide DNA methylation identifies patterns that associate with conserved transcriptional programs in osteosarcoma	Methylation profiling by high throughput sequencing	Canis lupus familiaris Homo sapiens	68	BED TXT XLSX SRA Run Selector	Lauren Mills	May 01, 2020
GSE48831	Viral small RNAs in Sindbis virus-infected mammalian cells	Non-coding RNA profiling by high throughput sequencing	Chlorocebus aethiops Homo sapiens	10	BED TXT SRA Run Selector	Sébastien Pfeffer	Nov 19, 2013
GSE102111	Non-canonical DNA structures at eukaryotic centromeres can resolve the CENP-B paradox	Other Genome binding/occupancy profiling by high throughput sequencing	Chlorocebus aethiops Homo sapiens	7	BED BEDGRAPH RTF SRA Run Selector	Jorja Henikoff	Jan 28, 2018
GSE141291	Coronavirus replication is controlled by both host and viral RNA m6A methylations	Other	Chlorocebus aethiops Homo sapiens	16	BED SRA Run Selector	Yaowei Huang	Dec 01, 2022
GSE197521	SARS-CoV-2 produces a diverse small viral RNA landscape capable of targeting host transcripts	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Chlorocebus aethiops Homo sapiens	99	BED CSV	Jeremy Sanford	Mar 01, 2022
GSE173498	Discovery and functional interrogation of the virus and host RNA interactome of SARS-CoV-2 proteins [eCLIP]	Other	Chlorocebus sabaeus Homo sapiens	147	BED BW TXT SRA Run Selector	Gene Yeo	Mar 09, 2022
GSE199431	Position-dependent function of human sequence-specific transcription factors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Chlorocebus sabaeus Homo sapiens Mus musculus	56	BED FA TSV TXT	Christopher Benner	Apr 26, 2024
GSE94936	Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Gasterosteus aculeatus Homo sapiens	21	BED BW TXT	John Rawls	May 02, 2017
GSE123105	Selective roles of vertebrate PCF11 in premature and full-length transcript termination	Expression profiling by high throughput sequencing Other Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens	95	BED BEDGRAPH BROADPEAK BW	Kinga Kamieniarz-Gdula	Feb 25, 2019
GSE136456	Transcriptionally regulated energy metabolism drives early erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio Homo sapiens	66	BED TXT WIG	Leonard Zon	Jun 09, 2021