GEO Browser - GEO

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23 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Homo sapiens			Christopher Benner
GSE60434	Hypoxia-induced TET-TNFa-p38-MAPK signaling axis drives tumor malignancy of human breast cancer	Methylation profiling by high throughput sequencing	Homo sapiens	2	BIGWIG SRA Run Selector	Christopher Benner	Oct 05, 2015
GSE68645	The DAXX co-repressor is directly recruited to active regulatory elements genome-wide to regulate autophagy programs in a model of human prostate cancer (RNA-seq)	Expression profiling by high throughput sequencing	Homo sapiens	4	TXT SRA Run Selector	Christopher Benner	Jun 24, 2015
GSE77129	Wiskott-Aldrich Syndrome-causative mutations disrupt alternative splicing and promote gene networks predisposed to hematologic malignancies	Expression profiling by high throughput sequencing	Homo sapiens	5	TXT SRA Run Selector	Christopher Benner	Jan 01, 2019
GSE54964	Transcriptomic analysis reveals novel long non-coding RNAs critical for vertebrate development [Affymetrix]	Expression profiling by array	Homo sapiens	6	CEL	Christopher Benner	May 15, 2015
GSE54968	Transcriptomic analysis reveals novel long non-coding RNAs critical for vertebrate development [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens	6	TXT SRA Run Selector	Christopher Benner	May 15, 2015
GSE54966	Transcriptomic analysis reveals novel long non-coding RNAs critical for vertebrate development [Illumina]	Methylation profiling by genome tiling array	Homo sapiens	8	TXT	Christopher Benner	May 15, 2015
GSE68647	The DAXX co-repressor is directly recruited to active regulatory elements genome-wide to regulate autophagy programs in a model of human prostate cancer (ChIP-seq)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	8	BED SRA Run Selector	Christopher Benner	Jun 24, 2015
GSE69932	Comparison of the transcriptome and chromatin state between human cord blood HSC and human iPSC derived hematopoietic progenitor using next-generation sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	9	BED TXT SRA Run Selector	Christopher Benner	Jan 01, 2019
GSE27682	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells [gene expression]	Expression profiling by array	Homo sapiens	12	TXT	Christopher Benner	May 15, 2011
GSE60604	An alternative pluripotent state confers interspecies chimaeric competency [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	12	BIGWIG SRA Run Selector	Christopher Benner	May 06, 2015
GSE68656	The DAXX co-repressor is directly recruited to active regulatory elements genome-wide to regulate autophagy programs in a model of human prostate cancer	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	12	BED	Christopher Benner	Jun 24, 2015
GSE60603	An alternative pluripotent state confers interspecies chimaeric competency [RNA-Seq]	Expression profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	14	TXT SRA Run Selector	Christopher Benner	May 06, 2015
GSE47626	Differential LINE-1 retrotransposition in induced pluripotent stem cells between humans and great apes	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Homo sapiens Pan paniscus Pan troglodytes	18	TXT SRA Run Selector	Christopher Benner	Oct 23, 2013
GSE54969	Transcriptomic analysis reveals novel long non-coding RNAs critical for vertebrate development	Expression profiling by array Expression profiling by high throughput sequencing Methylation profiling by genome tiling array	Homo sapiens	20	CEL	Christopher Benner	May 15, 2015
GSE27823	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells [ChIP-Seq, Gro-Seq]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	30	BED BEDGRAPH FA SRA Run Selector	Christopher Benner	May 15, 2011
GSE87831	Nucleoporin-mediated regulation of cell identity genes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens	33	BED TXT SRA Run Selector	Christopher Benner	Nov 15, 2016
GSE143780	Shear Stresses Associated with Cardiopulmonary Bypass Activate Expression Inflammatory Cytokines and Induce Necroptosis in Monocytes Via Calcium Dependent Signaling	Expression profiling by high throughput sequencing	Homo sapiens	35	TXT SRA Run Selector	Christopher Benner	Dec 06, 2020
GSE135498	Sequencing short capped RNAs captures acute transcription initiation and identifies promoter and distal regulatory elements across eukaryotes from total RNA	Other	Capsaspora owczarzaki Homo sapiens Mus musculus Nematostella vectensis Neurospora crassa Oryza sativa	40	BIGWIG BW TXT SRA Run Selector	Christopher Benner	Sep 16, 2019
GSE27824	Reprogramming Transcriptional Responses through Functionally-Distinct Classes of Enhancers in Prostate Cancer Cells	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens	42	BED BEDGRAPH FA	Christopher Benner	May 15, 2011
GSE60605	An alternative pluripotent state confers interspecies chimaeric competency	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Macaca mulatta Mus musculus Pan troglodytes	42	BIGWIG CEL TSV	Christopher Benner	May 06, 2015