GEO Browser - GEO

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845 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL24247		Homo sapiens
GSE219068	mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment	Other	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	356	BW	Changbin Sun	Jun 11, 2024
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384	BW TXT	Changbin Sun	Jun 11, 2024
GSE228002	Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale [I]	Expression profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens Mus musculus	39	TSV	Asia Mendelevich	Jul 11, 2023
GSE228009	Foreign RNA spike-ins enable accurate allele-specific expression analysis at scale	Expression profiling by high throughput sequencing	Caenorhabditis elegans Homo sapiens Mus musculus	110		Asia Mendelevich	Jul 11, 2023
GSE249786	Mitochondrial RNA-seq and total RNA-seq of 293T, HeLa, and N2a cells; RIP-seq of SUPV3L1, ceSUPV3L1, ATP5B, and TRAP1; Small RNA-seq of 293T mitochondrial fractions	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Caenorhabditis elegans Homo sapiens Mus musculus	36	BW CSV TXT	Xu Liu	Dec 19, 2023
GSE151761	Innovations in primate interneuron repertoire	Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus Mustela putorius furo	123	TXT SRA Run Selector	Fenna Marie Krienen	Jun 04, 2020
GSE229169	Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate motor cortex	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Callithrix jacchus Homo sapiens Macaca mulatta Mus musculus	46	MTX TSV	Bing Ren	Oct 31, 2023
GSE200470	Divergent composition and transposon-silencing activity of small RNAs in mammalian oocytes	Expression profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Canis lupus familiaris Capra hircus Cavia porcellus Cricetulus griseus Danio rerio Homo sapiens Macaca fascicularis Mesocricetus auratus Mus musculus Oryctolagus cuniculus Rattus norvegicus Sus scrofa domesticus	138		Wei Liu	Mar 06, 2024
GSE227592	ADAR1 biology can hinder effective antiviral RNA interference	Expression profiling by high throughput sequencing	Canis lupus familiaris Homo sapiens Mus musculus	45	CSV SF	Skyler Andrew Uhl	Mar 21, 2023
GSE186158	Single-cell transcriptomic atlas reveals the evolution of immune cells and molecules across multiple vertebrate species	Expression profiling by high throughput sequencing	Danio rerio Homo sapiens Macaca mulatta Mus musculus Rattus norvegicus Sus scrofa Xenopus tropicalis	7	TAR SRA Run Selector	Cangang Zhang	Jan 30, 2023
GSE192740	Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells)	Expression profiling by high throughput sequencing	Danio rerio Gallus gallus Homo sapiens Macaca mulatta Mesocricetus auratus Mus musculus Sus scrofa	132	H5 RDS TSV TXT SRA Run Selector	Liesbet Martens	Jan 11, 2022
GSE192742	Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches	Expression profiling by high throughput sequencing	Danio rerio Gallus gallus Homo sapiens Macaca mulatta Mesocricetus auratus Mus musculus Sus scrofa	147	CSV H5 JSON PNG TXT	Liesbet Martens	Jan 11, 2022
GSE212252	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio Homo sapiens Mus musculus	80	BROADPEAK HIC NARROWPEAK TAB	Luca Massimino	Sep 12, 2022
GSE110061	Direct DNA crosslinking with CAP-C uncovers transcription-dependent chromatin organization at high resolution	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	76	BIGWIG HIC NARROWPEAK TXT SRA Run Selector	Youzhi Cheng	Aug 22, 2020
GSE118785	H3K36me2 recruits DNMT3A and shapes intergenic DNA methylation landscapes	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	43	BW TDF SRA Run Selector	Carmen Rivas	Aug 30, 2019
GSE166155	KARR-seq reveals principles of high-order ribonucleoprotein structure assembly	Other	Drosophila melanogaster Homo sapiens Mus musculus Respiratory syncytial virus Vesicular stomatitis virus	67	PAIRS SRA Run Selector	Youzhi Cheng	Dec 06, 2023
GSE202040	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks [PRO-cap]	Other	Drosophila melanogaster Homo sapiens Mus musculus	11	BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE202042	High-resolution transcriptional analysis of immunoglobulin variable regions reveals the absence of direct relationships between somatic hypermutation, nascent transcription and epigenetic marks	Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus	78	BEDGRAPH BW	Maximilian Christian von der Linde	Jun 22, 2024
GSE210749	SCENIC+: identification of enhancers and gene regulatory networks using single-cell multiomics	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Homo sapiens Mus musculus	13	TSV	Gert Hulselmans	Apr 17, 2023
GSE223253	Autonomous transposons tune their sequences to ensure somatic suppression [FLASH]	Other	Drosophila melanogaster Homo sapiens Mus musculus	82	BW	IBRAHIM AVSAR ILIK	Jan 08, 2024