GEO Browser - GEO

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26 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter	Platform: GPL19057		Homo sapiens		WIG
GSE80154	Enhancer invasion shapes MYCN dependent transcriptional amplification in neuroblastoma	Expression profiling by array Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	144	BEDGRAPH CEL WIG	James Bradner	Jan 29, 2018
GSE73867	Nephron endowment	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	23	BED TXT WIG	Andrew P McMahon	Jan 31, 2016
GSE77328	OmoMYC blunts promoter invasion by oncogenic MYC to inhibit gene expression characteristic of MYC-dependent tumors	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	44	TXT WIG SRA Run Selector	Martin Eilers	Oct 18, 2016
GSE86912	Quantitative Proteomic and Transcriptomic Analysis Reveals Post-Transcriptional Regulation of Mitochondrial Biogenesis during Erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	32	BED WIG	Jian Xu	May 15, 2017
GSE88817	In situ CAPTURE of chromatin interactions by biotinylated dCas9	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	175	BED WIG	Jian Xu	Aug 24, 2017
GSE89418	EZH1 as a key epigenetic barrier to definitive haematopoiesis during embryonic development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	58	BED TXT WIG	Melissa Kinney	Jan 01, 2018
GSE108639	Simultaneous quantifications of protein-DNA contacts and transcriptomics in single cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	28	TSV WIG	Koos Rooijers	Apr 21, 2019
GSE139117	Analysis of CRE-mediated chromatin interactions by CAPTURE2.0	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	105	BED BW WIG	Jian Xu	Feb 20, 2020
GSE155972	Epigenetic Silencing by SETDB1 Suppresses Tumor-cell Intrinsic Immunogenicity	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	177	CSV H5 TXT WIG SRA Run Selector	Jingyi Wu	Mar 18, 2021
GSE166179	A primed immune transcriptional program is activated in oligodendroglia in multiple sclerosis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens Mus musculus	1185	CSV H5 SF WIG	Eneritz Agirre	May 21, 2021
GSE184470	Evidence that direct inhibition of transcription factor binding is the prevailing mode of gene and repeat repression by DNA methylation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Homo sapiens Mus musculus	98	WIG	Dirk Schuebeler	Sep 29, 2022
GSE187007	G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions. Nat Genet (2023). https://doi.org/10.1038/s41588-023-01437-4	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Drosophila melanogaster Homo sapiens Mus musculus Saccharomyces cerevisiae	63	BED WIG SRA Run Selector	Amal Makrini	Apr 14, 2023
GSE196106	Functional analysis of Vsx2 super-enhancer reveals an autoregulatory network governing Vsx2 expression during retinogenesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	26	TAB WIG	Shuchang Liu	Jul 13, 2022
GSE200586	Chromatin opening by p53 is confined by Trim24 in a histone methylation-dependent manner	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	174	BW WIG	Luke Thomas Isbel	Apr 29, 2023
GSE73865	Genome-wide map of SIX2 and SIX1 binding in human embryonic kidney cortex	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	21	BED WIG SRA Run Selector	Andrew P McMahon	Jan 31, 2016
GSE84052	RAG1 targeting in the genome is dominated by chromatin interactions mediated by the non-core regions of RAG1 and RAG2	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	4	WIG SRA Run Selector	Yaakov Maman	Jul 06, 2016
GSE86393	Direct and tissue-specific assessment of the damaging potential of regulatory SNPs	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	6	BEDGRAPH WIG SRA Run Selector	Jim Hughes	Jun 15, 2017
GSE89416	ATAC-seq analysis in 5F cells and AGM cells with EZH1 depletion	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	7	BED WIG SRA Run Selector	Melissa Kinney	Jan 01, 2018
GSE99173	ATAC-seq analysis in K562 cells with or without HBD-1k region knockout, mouse KH2 embryonic stem cells (ESCs) and differentiated KH2 Embryoid bodies (EBs)	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	14	BED WIG SRA Run Selector	Jian Xu	Aug 24, 2017
GSE99177	ChIP-seq analysis of dCas9 chromatin occupancy by dCas9/sgRNA-mediated CAPTURE	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	61	BED TXT WIG SRA Run Selector	Jian Xu	Aug 24, 2017