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18 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Gallus gallus			BIGWIG
GSE87250	Multiple regulatory modules are required for scale-to-feather conversion	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	40		BIGWIG	Ping Wu	Dec 31, 2017
GSE111101	Transcriptome analyses of reprogrammed feather / scale chimeric explants revealed co-expressed epithelial gene networks during organ specification	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	22		BIGWIG TXT	Yung-Chih Lai	Oct 15, 2018
GSE136224	Folding Keratin Gene Clusters During Skin Specification	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	61		BIGWIG SRA Run Selector	Ya-Chen Liang	Jun 08, 2020
GSE141015	Atypical chromatin structure of immune-related genes expressed in chicken erythrocytes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	4		BIGWIG	James Ronald Davie	Dec 31, 2020
GSE155350	Coupled protein synthesis and ribosome-guided piRNA processing on mRNAs	Expression profiling by high throughput sequencing Other	Gallus gallus Mus musculus	27		BIGWIG TXT SRA Run Selector	Xin Li	Sep 07, 2021
GSE161565	Profiling NSD3-dependent neural crest gene expression reveals known and novel candidate regulatory factors	Expression profiling by high throughput sequencing	Gallus gallus	10		BIGWIG XLSX SRA Run Selector	Micah Gearhart	Mar 04, 2021
GSE165330	Amniotes co-opt intrinsic genetic instability to protect germ-line genome integrity	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing Other	Gallus gallus	123		BIGWIG CSV SF TXT SRA Run Selector	Jiafei Shen	Jan 24, 2023
GSE231492	Dimeric G-quadruplex motifs-induced NFRs determine strong replication origins in vertebrates	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Third-party reanalysis	Gallus gallus Homo sapiens Mus musculus	14		BED BIGWIG NARROWPEAK	Caroline Tonnerre-Doncarli	Jul 19, 2023
GSE87248	ChIP-seq for embryonic chicken feather and scale samples	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	8		BIGWIG PDF SRA Run Selector	Ping Wu	Dec 31, 2017
GSE111098	ATAC-Seq of chicken embryonic metatarsal skin treated with RCAS-CTNNB1, RCAS-GFP, and retinoic acid	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	6		BIGWIG SRA Run Selector	Yung-Chih Lai	Oct 15, 2018
GSE128864	Atypical chromatin structure of immune-related genes expressed in chicken erythrocytes [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	2		BIGWIG SRA Run Selector	James Ronald Davie	Dec 31, 2020
GSE133379	Detection of genomic G-quadruplexes in living cells using a small artificial protein	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Homo sapiens Mus musculus	18		BIGBED BIGWIG NARROWPEAK SRA Run Selector	Zheng Tan	Oct 13, 2020
GSE141019	Cis-regulatory analysis of Onecut1 in fate-restricted retinal progenitor cells	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	2		BIGWIG SRA Run Selector	Sruti Patoori	Apr 17, 2020
GSE151467	cis-regulation of Grem1 expression during limb development [ATAC HH24]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	2		BIGWIG SRA Run Selector	DBM Bioinformatics Core Facility	Jul 30, 2021
GSE151488	cis-regulation of Grem1 expression during limb development	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	10		BIGWIG	DBM Bioinformatics Core Facility	Jul 29, 2021
GSE194418	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	15		BED BIGWIG NARROWPEAK	Aurelie Hintermann	Jun 20, 2022
GSE195592	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	46		BED BEDGRAPH BIGWIG BW COOL NARROWPEAK TXT	Aurelie Hintermann	Jun 20, 2022
GSE203031	Developmental and evolutionary comparative analysis of a HoxD regulatory landscape in mammals and birds [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	12		BED BEDGRAPH BIGWIG NARROWPEAK	Aurelie Hintermann	Jun 20, 2022