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1130 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Gallus gallus
GSE20942	Characterization of miRNA transcriptome of skeletal muscle from broiler and layer chicken lines by deep sequencing	Non-coding RNA profiling by high throughput sequencing	Gallus gallus	2	BED TXT SRA Run Selector	Tingting Li	Mar 18, 2011
GSE27945	Genome-wide CTCF binding maps in chicken red blood cells	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	2	BED MAP	David Martin	Apr 15, 2011
GSE28080	Identification of long non-protein coding RNAs in chicken skeletal muscle by Solexa sequencing	Non-coding RNA profiling by high throughput sequencing	Gallus gallus	1	BED BEDGRAPH	Tingting Li	Feb 20, 2012
GSE33541	Marek's Disease Virus Infection Induces Differential Chromatin Marks and Tissue-specific effects in inbred chicken lines	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	8	BED PROBSCOREISLAND TXT SRA Run Selector	Apratim Mitra	Jan 01, 2013
GSE38066	Epigenomic profiling of enhancers identifies orphan nuclear receptors NR2F1 and NR2F2 as novel regulators of human neural crest.	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	4	BED SRA Run Selector	Alvaro Rada	Sep 13, 2012
GSE43512	Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates	Methylation profiling by high throughput sequencing	Anolis carolinensis Danio rerio Gallus gallus Homo sapiens Mus musculus Ornithorhynchus anatinus Xenopus tropicalis	24	BED SRA Run Selector	David Sims	Jan 22, 2013
GSE44588	An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	7	BED SRA Run Selector	Christian Roy	Mar 26, 2013
GSE44690	An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other Non-coding RNA profiling by high throughput sequencing	Gallus gallus Mus musculus	56	BED	Christian Roy	Mar 26, 2013
GSE44799	Distinct Global Shifts in Genomic Binding Profiles of Limb Malformation Associated HOXD13 Mutations	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Gallus gallus	13	BED TXT SRA Run Selector	Peter Hansen	Aug 19, 2013
GSE45049	An Ancient Transcription Factor Initiates the Burst of piRNA Production During Early Meiosis in Mouse Testes (smallRNA-Seq)	Non-coding RNA profiling by high throughput sequencing	Gallus gallus Mus musculus	32	BED CSV SRA Run Selector	Christian Roy	Mar 27, 2013
GSE51846	Clustering of CpG islands constitutes an important determinant of the interphase chromosome 3D organization [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	4	BED SRA Run Selector	Artem V Artemov	Mar 01, 2014
GSE51939	Clustering of CpG islands constitutes an important determinant of the interphase chromosome 3D organization	Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus	10	BED BEDGRAPH	Artem V Artemov	Mar 01, 2014
GSE56984	Methylome Analysis in Chickens Immunized with Infectious Laryngotracheitis Vaccine	Methylation profiling by high throughput sequencing	Gallus gallus	12	BED TXT SRA Run Selector	Jose Adrian Carrillo	Aug 28, 2014
GSE86088	Genome-wide binding of posterior HOXA/D transcription factors reveals subgrouping and association with CTCF [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	40	BED BW SRA Run Selector	Daniel Murad Ibrahim	Dec 31, 2016
GSE102062	Sex-biased miRNA expression in mouse, opossum and chicken	Non-coding RNA profiling by high throughput sequencing	Gallus gallus Monodelphis domestica Mus musculus	76	BED TXT SRA Run Selector	Maria Warnefors	Nov 01, 2017
GSE115561	Similarities and differences in the regulation of HoxD genes during chick and mouse limb development [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus Mus musculus	33	BED BEDGRAPH SRA Run Selector	Nayuta Yakushiji-Kaminatsui	Nov 27, 2018
GSE115563	Similarities and differences in the regulation of HoxD genes during chick and mouse limb development.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Gallus gallus Mus musculus	64	BED BEDGRAPH TXT	Nayuta Yakushiji-Kaminatsui	Nov 27, 2018
GSE117595	Mapping of low-salt soluble chromatin identifies known and novel transcriptionally active genes in chicken erythrocytes	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	1	BED TXT SRA Run Selector	James Ronald Davie	Jul 24, 2019
GSE121318	Reconstruction of the global neural crest gene regulatory network in vivo [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Gallus gallus	17	BED TXT SRA Run Selector	Tatjana Sauka-Spengler	Oct 09, 2019
GSE121527	Reconstruction of the global neural crest gene regulatory network in vivo	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Gallus gallus	213	BED MTX TSV TXT	Tatjana Sauka-Spengler	Oct 09, 2019