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50 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Bacteroides thetaiotaomicron
GSE26772	In vitro transcriptional profiling of Bacteroides thetaiotaomicron in lactose, galactose and human milk oligosaccharides	Third-party reanalysis Expression profiling by array	Bacteroides thetaiotaomicron Bifidobacterium longum	8	CEL TXT	Angela M Marcobal	Jan 01, 2013
GSE17712	Identifying genetic determinants needed to establish a human gut symbiont in its habitat	Other	Bacteroides thetaiotaomicron	59	TXT	Andrew L Goodman	Sep 16, 2009
GSE107550	The FibroChip, a functional DNA microarray to monitor cellulolysis and hemicellulolysis activities of rumen microbiota	Other Expression profiling by array	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bacteroides xylanisolvens XB1A Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Escherichia coli K-12 Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Fibrobacter succinogenes subsp. succinogenes S85 Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens bovine gut metagenome uncultured Neocallimastigales	14	TXT	Sophie Comtet-Marre	Dec 01, 2017
GSE235620	CRISPR-based screening of small RNA modulators of bile susceptibility in Bacteroides thetaiotaomicron	Other	Bacteroides thetaiotaomicron	9	FASTA TXT	Alexander J Westermann	Jun 27, 2023
GSE122256	Detection of carbohydrate-active enzyme genes in the rumen of young lambs	Genome variation profiling by array	Acetivibrio clariflavus Acetivibrio thermocellus Agathobacter rectalis Bacteroides fragilis Bacteroides ovatus Bacteroides sp. Bacteroides thetaiotaomicron Bacteroides xylanisolvens Bifidobacterium adolescentis Bifidobacterium animalis Bifidobacterium longum Butyrivibrio fibrisolvens Butyrivibrio hungatei Cellulomonas fimi Cellulomonas flavigena Cellulosilyticum ruminicola Clostridioides difficile Clostridium acetobutylicum Clostridium beijerinckii Clostridium cellulovorans Enterobacter sp. Enterococcus faecium Epidinium caudatum Epidinium ecaudatum Eudiplodinium maggii Fibrobacter intestinalis Fibrobacter succinogenes Lachnospira eligens Lactococcus lactis Levilactobacillus brevis Limosilactobacillus fermentum Microbiota Neocallimastix frontalis Neocallimastix patriciarum Orpinomyces joyonii Orpinomyces sp. Piromyces communis Piromyces rhizinflatus Piromyces sp. Piromyces sp. 'equi' Polyplastron multivesiculatum Pseudobacteroides cellulosolvens Pseudobutyrivibrio xylanivorans Roseburia hominis Roseburia intestinalis Ruminiclostridium cellulolyticum Ruminococcus albus Ruminococcus champanellensis Ruminococcus flavefaciens Ruminococcus sp. Segatella bryantii Selenomonas ruminantium Xylanibacter ruminicola [Eubacterium] cellulosolvens uncultured Neocallimastigales	6	TXT	Evelyne Forano	Oct 01, 2019
GSE134116	Elucidating BT4338 binding in Bacteroides thetaiotaomicron following 10 minutes of carbon starvation.	Genome binding/occupancy profiling by high throughput sequencing	Bacteroides thetaiotaomicron	6	BIGWIG SRA Run Selector	Guy Townsend	Dec 19, 2019
GSE25537	Methanobrevibacter smithii expression profiling	Expression profiling by high throughput sequencing Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Methanobrevibacter smithii ATCC 35061 Parabacteroides distasonis Phocaeicola vulgatus	80	CEL TXT	Federico E Rey	Nov 07, 2011
GSE65449	Characterizing the interactions between a naturally-primed IgA and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice [RNA-Seq]	Expression profiling by high throughput sequencing	Bacteroides thetaiotaomicron	10	TXT SRA Run Selector	Joseph D Planer	Jun 29, 2015
GSE65456	Characterizing the interactions between a naturally-primed IgA (mAb 260.8) and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice	Expression profiling by high throughput sequencing Expression profiling by array	Agathobacter rectalis Bacteroides thetaiotaomicron Lachnospira eligens Methanobrevibacter smithii Parabacteroides distasonis Phocaeicola vulgatus	22	CEL TXT	Joseph D Planer	Jun 29, 2015
GSE134115	Elucidating the BT4338 regulon	Expression profiling by high throughput sequencing	Bacteroides thetaiotaomicron	12	XLSX SRA Run Selector	Guy Townsend	Dec 19, 2019
GSE137571	Genome-wide RNA-seq of Bacteroides thetaiotaomicron VPI-5482 grown on ribose	Expression profiling by high throughput sequencing	Bacteroides thetaiotaomicron	6	TXT SRA Run Selector	Eric C Martens	Jan 01, 2020
GSE144492	High-resolution view at the coding transcriptome and noncoding RNAs of major gut microbe Bacteroides thetaiotaomicron	Expression profiling by high throughput sequencing	Bacteroides thetaiotaomicron	24	WIG XLSX SRA Run Selector	Lars Barquist	Jun 11, 2020
GSE149357	RNA-seq of human gut bacterial isolates grown on seaweed polysaccharides	Expression profiling by high throughput sequencing	Bacteroides thetaiotaomicron Bacteroides xylanisolvens Faecalicatena contorta Faecalicatena fissicatena	24	XLSX SRA Run Selector	Eric Martens	Sep 01, 2020
GSE169260	Role of OxyR and iron in gene regulation in Bacteroides thetaiotaomicron	Expression profiling by high throughput sequencing	Bacteroides thetaiotaomicron	16	XLSX SRA Run Selector	Janina P Lewis	Mar 30, 2023
GSE193734	Transcriptomic analysis of Bacteroides thetaiotaomicron inositol lipid knockout strains	Expression profiling by high throughput sequencing	Bacteroides thetaiotaomicron	8	TXT	Stacey Heaver	Jan 21, 2022
GSE234958	An expanded transcriptome atlas for Bacteroides thetaiotaomicron reveals a small RNA that modulates tetracycline sensitivity	Expression profiling by high throughput sequencing	Bacteroides thetaiotaomicron	40	CSV XLSX	Alexander J. Westermann	Jan 25, 2024
GSE237111	Effect of supplementation of a minimal culture medium with inulin, corn fiber and pectin, compared with a glucose condition, on the gene expression of a set of bacteria of the intestinal microbiota	Expression profiling by high throughput sequencing	Bacteroides thetaiotaomicron Bacteroides xylanisolvens Roseburia intestinalis Subdoligranulum variabile	36	CSV	paul Biscarrat	Dec 01, 2023
GSE2231	In vitro and in vivo transcriptional profiling of Bacteroides thetaiotaomicron	Expression profiling by array	Bacteroides thetaiotaomicron Bifidobacterium longum	42		Justin L. Sonnenburg	Mar 30, 2005
GSE4703	B.thetaiotaomicron wt versus KO3172, PR chow, NMRI	Expression profiling by array	Bacteroides thetaiotaomicron Bifidobacterium longum	23		Justin L. Sonnenburg	May 14, 2006
GSE5274	B. thetaiotaomicron before and after glucose addition to tryptone media	Expression profiling by array	Bacteroides thetaiotaomicron Bifidobacterium longum	4		Magnus K Bjursell	Sep 01, 2006