GEO Browser - GEO

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95 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Danio rerio		BED
GSE79213	The functions of m6A and Ythdf2 during zebrafish early development	Expression profiling by high throughput sequencing Other	Danio rerio	76	XLSX BED SRA Run Selector	Boxuan Simen Zhao	Feb 07, 2017
GSE182714	Adar-mediated A-to-I editing is required for establishment of embryonic body axes in zebrafish	Expression profiling by high throughput sequencing Other	Danio rerio	32	XLSX TSV BED SRA Run Selector	Cecilia Lanny Winata	Aug 02, 2022
GSE217063	Shigella induces epigenetic reprogramming of zebrafish neutrophils	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	12	XLSX BIGWIG BED	Serge Mostowy	Sep 13, 2023
GSE243256	Mapping the chromatin accessibility landscape of zebrafish embryogenesis at single-cell resolution by SPATAC-seq	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	535	XLSX BW BED	Keyong Sun	Apr 14, 2024
GSE167579	Comparative 3D Genome Architecture in Vertebrates (Hi-C)	Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus	25	XLS HDF5 BED SRA Run Selector	Mengnan He	Apr 12, 2022
GSE167581	Comparative 3D Genome Architecture in Vertebrates	Expression profiling by high throughput sequencing Other	Bos taurus Canis lupus familiaris Danio rerio Felis catus Gallus gallus Homo sapiens Macaca mulatta Mus musculus Oryctolagus cuniculus Ovis aries Rattus norvegicus Sus scrofa	54	XLS HDF5 BED	Mengnan He	Apr 12, 2022
GSE20600	Genome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	WIG BED SRA Run Selector	Lihua Julie Zhu	Feb 25, 2011
GSE32483	Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	24	WIG BED SRA Run Selector	Ozren Bogdanovic	May 08, 2012
GSE74617	Enhancers reside in a unique epigenetic environment during early zebrafish development	Genome binding/occupancy profiling by high throughput sequencing Other	Danio rerio	24	WIG COD BED	lucas kaaij	Nov 06, 2015
GSE75734	Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	18	WIG BED SRA Run Selector	Yuvia Alheli Perez Rico	Nov 14, 2016
GSE106676	From pioneer to repressor: Bimodal foxd3 activity dynamically remodels neural crest regulatory landscape in vivo	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	151	WIG TXT BW BED SRA Run Selector	Tatjana Sauka-Spengler	Dec 07, 2018
GSE136456	Transcriptionally regulated energy metabolism drives early erythropoiesis	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Danio rerio Homo sapiens	66	WIG TXT BED	Leonard Zon	Jun 09, 2021
GSE37453	Extensive alternative polyadenylation during zebrafish development	Expression profiling by high throughput sequencing	Danio rerio	14	TXT BW BED SRA Run Selector	Igor Ulitsky	Jun 17, 2012
GSE41458	Zic3 interacts with distant regulatory elements to regulate zebrafish developmental genes	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	4	TXT BED SRA Run Selector	Vibhor Kumar	Feb 27, 2014
GSE68087	Active DNA demethylation at enhancers during the vertebrate phylotypic period	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus Xenopus tropicalis	30	TXT BED SRA Run Selector	Ozren Bogdanovic	Jan 29, 2016
GSE71434	Allelic reprogramming of the histone modification H3K4me3 in early mammalian development	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Danio rerio Mus musculus	57	TXT BED SRA Run Selector	Bingjie Zhang	Sep 15, 2016
GSE77921	SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	6	TXT BED SRA Run Selector	Leonard Zon	Feb 08, 2021
GSE77923	SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	12	TXT BED	Leonard Zon	Feb 08, 2021
GSE89815	N6-methyladenosine dynamics during early vertebrate embryogenesis	Other	Danio rerio	16	TXT BED SRA Run Selector	Håvard Aanes	May 01, 2017
GSE94933	Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells [zebrafish]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio	7	TXT BW BED SRA Run Selector	John Rawls	May 02, 2017