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16 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Branchiostoma lanceolatum			SRA Run Selector
GSE68737	A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies	Other Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio	74		BEDGRAPH BW FA SRA Run Selector	Juan J. Tena	Dec 16, 2015
GSE102144	Base resolution methylome profiling of Branchiostoma lanceolatum embryos and adult tissues	Methylation profiling by high throughput sequencing	Branchiostoma lanceolatum	10		TSV TXT SRA Run Selector	Ozren Bogdanovic	Aug 15, 2018
GSE106372	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum	17		BED SRA Run Selector	Juan J. Tena	Aug 15, 2018
GSE106428	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [ATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Oryzias latipes	29		BED SRA Run Selector	Juan J. Tena	Aug 15, 2018
GSE106429	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [CAGE]	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum	7		BEDGRAPH SRA Run Selector	Juan J. Tena	Aug 15, 2018
GSE106430	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [RNA-Seq]	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Oryzias latipes	81		TXT SRA Run Selector	Juan J. Tena	Aug 15, 2018
GSE122245	Comparative RNA-seq analysis between control and SU5402 treated amphioxus (Branchiostoma lanceolatum) embryos	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum	24		FASTA TXT SRA Run Selector	Stephanie Bertrand	Jan 01, 2020
GSE141609	Evolution of CpH methylation in vertebrate brains	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Apis mellifera Branchiostoma lanceolatum Callorhinchus milii Danio rerio Gallus gallus Lethenteron camtschaticum Monodelphis domestica Octopus bimaculoides Ornithorhynchus anatinus	11		CGMAP TSV SRA Run Selector	Ryan Lister	Oct 26, 2020
GSE136554	Ancient genomic regulatory blocks are a major source for gene deserts in vertebrates after whole genome duplications	Other	Branchiostoma lanceolatum Danio rerio Mus musculus	12		BEDGRAPH SRA Run Selector	Rafael Domínguez Acemel	Mar 23, 2021
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32		BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE188331	Base-resolution DNA hydroxymethylation maps of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using ACE-seq	Other	Branchiostoma lanceolatum Danio rerio Strongylocentrotus purpuratus	15		BED SRA Run Selector	Ksenia Skvortsova	Nov 08, 2021
GSE188332	DNA hydroxymethylation profiling of purple sea urchin (Strongylocentrotus purpuratus), european lancelet (Branchiostoma lanceolatum) and zebrafish (Danio rerio) using hMeDIP-seq	Methylation profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio Strongylocentrotus purpuratus	8		BW SRA Run Selector	Ksenia Skvortsova	Nov 08, 2021
GSE166495	ATAC-seq data of control and Activin-treated amphioxus ectodermal explants at 11 hpf and 19 hpf.	Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum	8		BED SRA Run Selector	Juan J. Tena	Jan 24, 2022
GSE166497	RNA-seq data of control and Activin-treated amphioxus ectodermal explants at 11 hpf and 19 hpf.	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum	8		TSV SRA Run Selector	Juan J. Tena	Jan 24, 2022
GSE148781	Gain of gene regulatory network interconnectivity at the origin of vertebrates [ATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio	24		BED SRA Run Selector	Juan J. Tena	Feb 26, 2022
GSE148782	Gain of gene regulatory network interconnectivity at the origin of vertebrates [RNA-seq]	Expression profiling by high throughput sequencing	Branchiostoma lanceolatum Danio rerio	33		TXT SRA Run Selector	Juan J. Tena	Feb 26, 2022