GEO Browser - GEO

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96 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Escherichia coli		XLSX
GSE30424	Indole-3-Acetaldehyde Inhibits Escherichia coli O157:H7 Biofilm Formation by Reducing Curli Formation	Expression profiling by array	Escherichia coli	2	CEL CHP XLSX	Jintae Lee	Jul 05, 2012
GSE65277	Autoimmune peptide antigen reactivity in normal B6 mice Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2	XLSX	Jennie Hamilton	Feb 28, 2015
GSE65278	Autoimmune peptide antigen reactivity in BXD2 mice with spontaneous systemic autoimmune disease Pepperchip 2.0	Protein profiling by protein array	Betapolyomavirus macacae Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	2	XLSX	Jennie Hamilton	Feb 28, 2015
GSE65290	General Approach for Tetramer Based Identification of Autoantigen Reactive B Cells: Characterization of La and snRNP Reactive B Cells in Autoimmune BXD2 Mice	Protein profiling by protein array	Betapolyomavirus macacae Caprine arthritis encephalitis virus Chlamydia pneumoniae Chlamydia trachomatis Coxsackievirus A20 Coxsackievirus A9 Coxsackievirus B4 Coxsackievirus B4 (strain E2) Escherichia coli Haemophilus influenzae Helicobacter pylori Hepacivirus hominis Hepatitis C virus isolate HC-J6 Homo sapiens Human Endogenous Retrovirus IDDMK1,2-22 Human T-cell leukemia virus type I Human T-cell lymphotrophic virus type 1 (isolate MT-2) Human adenovirus 12 Human alphaherpesvirus 1 Human alphaherpesvirus 2 Human betaherpesvirus 5 Human betaherpesvirus 6 Human endogenous retrovirus K Human herpesvirus 4 strain B95-8 Human herpesvirus 4 type 1 Human herpesvirus 4 type 2 Human immunodeficiency virus 1 Human poliovirus 3 strain Sabin Human rotavirus MP409 Klebsiella pneumoniae Lactobacillus delbrueckii subsp. bulgaricus Mus musculus Mycobacterium avium Mycobacterium avium subsp. paratuberculosis Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium gordonae Mycobacterium tuberculosis Mycobacterium tuberculosis variant bovis Paraburkholderia fungorum Porphyromonas gingivalis Porphyromonas gingivalis W83 Prochlorococcus marinus str. MIT 9202 Proteus mirabilis Shigella flexneri Staphylococcus aureus Staphylococcus aureus A9635 Streptococcus pyogenes Torque teno virus Trypanosoma cruzi Yersinia enterocolitica human gammaherpesvirus 4	29	XLSX	Jennie Hamilton	Feb 28, 2015
GSE75718	Deep sequencing data for PAM-SCANR tested CRISPR-Cas systems	Other	Escherichia coli Francisella tularensis subsp. novicida Halalkalibacterium halodurans Streptococcus thermophilus	14	XLSX SRA Run Selector	Chase Beisel	Feb 17, 2016
GSE71562	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	Expression profiling by high throughput sequencing	Escherichia coli	18	XLSX SRA Run Selector	Joachim von Wulffen	Jul 01, 2016
GSE76167	Mechanisms of nickel toxicity in bacteria	Expression profiling by high throughput sequencing	Escherichia coli	6	XLSX SRA Run Selector	Agnès Rodrigue	Jul 01, 2016
GSE69782	Deep sequencing reveals mRNA recruitment in translation initiation	Non-coding RNA profiling by high throughput sequencing	Escherichia coli	28	FA XLSX SRA Run Selector	Xiao-Dong Su	Jul 27, 2016
GSE84847	Expression data of the acrR mutant E.coli compared to wild-type	Expression profiling by array	Escherichia coli	4	CEL XLSX	Ok Bin Kim	Jul 27, 2016
GSE80251	Genome-wide transcriptome analyses of E. coli treated with ribosome-targeting antibiotics	Expression profiling by high throughput sequencing	Escherichia coli	9	XLSX SRA Run Selector	Mee-Ngan F. Yap	Sep 13, 2016
GSE81584	Mfd alters global transcription patterns in undamaged Escherichia coli cells	Expression profiling by high throughput sequencing	Escherichia coli	10	TXT XLSX SRA Run Selector	Rachel Krasich	May 01, 2017
GSE101471	Transcriptome of Escherichia coli cells in coculture (Ile auxotroph and Leu auxotroph)	Expression profiling by genome tiling array	Escherichia coli Escherichia coli K-12	20	CEL XLSX	Kazufumi Hosoda	Jul 15, 2017
GSE95310	Cross-talk between species that do not share often the same environment	Expression profiling by high throughput sequencing	Escherichia coli Pseudomonas putida	6	XLSX SRA Run Selector	Carlos Molina Santiago	Oct 01, 2017
GSE96706	Collateral sensitivity of antibiotic resistant bacteria to antimicrobial peptides	Expression profiling by high throughput sequencing	Escherichia coli	84	CSV XLSX SRA Run Selector	Balazs Balint	Mar 29, 2018
GSE117186	Topo-Seq application for topoisomerases binding sites identification with a single-nucleotide resolution	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	31	FASTA GFF TAR XLSX SRA Run Selector	Dmitry Sutormin	Jul 17, 2018
GSE117326	Gene expression profiles in E. coli under different frequency signals	Expression profiling by high throughput sequencing	Escherichia coli	12	TXT XLSX SRA Run Selector	Zhi Liang	Jul 19, 2018
GSE110493	The antibiotics potentiator bicarbonate causes upregulation of tryptophanase and iron acquisition proteins in Escherichia coli	Expression profiling by high throughput sequencing	Escherichia coli	4	XLSX SRA Run Selector	Joaquin Sanchez	Nov 01, 2018
GSE100263	Microbiome characterization using transfer RNA sequencing	Non-coding RNA profiling by high throughput sequencing	Bacillus subtilis Barnesiella viscericola Escherichia coli Staphylococcus aureus mouse gut metagenome	28	TXT XLSX SRA Run Selector	Tao Pan	Nov 09, 2018
GSE123554	Reconstruction of transcriptional regulatory networks of Fis and H-NS in Escherichia coli from genome wide data analysis	Expression profiling by high throughput sequencing	Escherichia coli	6	XLSX SRA Run Selector	Payel Ghosh	Dec 11, 2018
GSE111370	RNA sequencing to identify differences between two E. coli strains that respond differently to volatiles of Streptomyces sp.	Expression profiling by high throughput sequencing	Escherichia coli	2	XLSX SRA Run Selector	Mariana Avalos Garcia	Mar 02, 2019