GEO Browser - GEO

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350 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Escherichia coli		SRA Run Selector
GSE21341	genome-wide measurement of mRNA lifetime in Escherichia coli	Expression profiling by high throughput sequencing	Escherichia coli	5	TXT SRA Run Selector	Huiyi Chen	Jul 30, 2010
GSE24998	[E-MTAB-387] RNA sequencing in E. coli K12	Expression profiling by high throughput sequencing	Escherichia coli	2	TXT SRA Run Selector	European Bioinformatics Institute	Feb 05, 2011
GSE31982	Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay	Expression profiling by high throughput sequencing	Escherichia coli Homo sapiens	18	TXT SRA Run Selector	Tarjei S Mikkelsen	Feb 26, 2012
GSE33671	Selective ribosome profiling reveals the co-translational chaperone action of trigger factor in vivo	Expression profiling by high throughput sequencing	Escherichia coli	8	TAGALIGN TXT SRA Run Selector	Eugene Oh	Dec 09, 2011
GSE35641	The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria	Expression profiling by high throughput sequencing	Bacillus subtilis subsp. subtilis str. 168 Escherichia coli Escherichia coli BW25113 Escherichia coli str. K-12 substr. MG1655	7	WIG SRA Run Selector	Gene-Wei Li	Apr 01, 2012
GSE36248	Transcriptome mapping of blaCMY-2 positive IncA/C plasmid pAR060302	Expression profiling by high throughput sequencing	Escherichia coli	4	TXT SRA Run Selector	Timothy J. Johnson	Mar 28, 2012
GSE39926	Evolutionary potential, cross-stress behavior and the genetic basis of acquired stress resistance in Escherichia coli	Expression profiling by high throughput sequencing	Escherichia coli	6	TXT SRA Run Selector	Vadim Mozhayskiy	Feb 28, 2013
GSE43408	Quantitative Different Analysis of antimicrobial peptide LL37 expressed in E.coli Top 10 under aerobic and anaerobic condition.	Expression profiling by high throughput sequencing	Escherichia coli	4	TXT SRA Run Selector	WEI LIU	Aug 21, 2013
GSE46479	Ultra-deep RNA-seq of in vitro and in vivo transcripts by Escherichia coli RNA polymerase	Expression profiling by high throughput sequencing Other	Escherichia coli	5	TXT SRA Run Selector	Masahiko Imashimizu	Aug 01, 2013
GSE48151	Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coliK12 through accurate full-length transcripts assembling	Expression profiling by high throughput sequencing	Escherichia coli	15	BIGWIG SRA Run Selector	Zhengchang Su	Jun 21, 2013
GSE53767	Absolute quantification of protein production reveals principles underlying protein synthesis rates	Expression profiling by high throughput sequencing	Escherichia coli	4	WIG SRA Run Selector	Gene-Wei Li	Apr 24, 2014
GSE54199	Transcriptome and marker frequency analysis of E. coli (control vs. Trimethoprim) and S. pneumoniae (control vs. HPUra/Kanamycin)	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Escherichia coli Streptococcus pneumoniae	18	TXT SRA Run Selector	Jelle Slager	Apr 10, 2014
GSE56372	Correcting Direct Effects of Ethanol on Translation and Transcription Machinery Confers Ethanol Tolerance in Bacteria [Ribosome_Profiling]	Expression profiling by high throughput sequencing	Escherichia coli	24	WIG XLS SRA Run Selector	Rembrandt Haft	Jun 18, 2014
GSE56407	Correcting Direct Effects of Ethanol on Translation and Transcription Machinery Confers Ethanol Tolerance in Bacteria [Terminator_Readthrough_RNAseq]	Expression profiling by high throughput sequencing	Escherichia coli	2	WIG SRA Run Selector	Rembrandt Haft	Jun 18, 2014
GSE56720	Nascent elongating transcript sequencing (NET-seq) for Escherichia coli and Bacillus subtilis reveals a consensus pause sequence enriched at translation start sites.	Expression profiling by high throughput sequencing Other	Bacillus subtilis Escherichia coli	8	TXT WIG SRA Run Selector	Matthew H Larson	May 05, 2014
GSE58285	Direct entry by RNase E is a major pathway for the degradation and processing of RNA in Escherichia coli	Expression profiling by high throughput sequencing	Escherichia coli	6	BEDGRAPH SRA Run Selector	Kenneth McDowall	Jun 10, 2014
GSE58637	MicL, a new σE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein	Expression profiling by high throughput sequencing	Escherichia coli	14	WIG SRA Run Selector	Carol A Gross	Jul 17, 2014
GSE59397	Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification (V)	Expression profiling by high throughput sequencing	Escherichia coli	21	CSV SRA Run Selector	Robert C Landick	Jul 18, 2014
GSE59682	Transcriptome analysis of Escherichia coli under deoxynivalenol and nivalenol conditions	Expression profiling by high throughput sequencing	Escherichia coli	5	TXT SRA Run Selector	Jungwook Park	Jul 23, 2017
GSE60107	Next generation sequencing analysis reveals that the ribonucleases RNase II, RNase R and PNPase affect bacterial motility and biofilm formation in E. coli	Expression profiling by high throughput sequencing	Escherichia coli	4	TXT SRA Run Selector	Cecilia M. Arraiano	Mar 17, 2015