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1152 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Escherichia coli
GSE144795	The serotonin neurotransmitter modulates virulence of enteric pathogens	Expression profiling by high throughput sequencing	Escherichia coli	2	ASTAR XLSX SRA Run Selector	Aman Kumar	May 08, 2020
GSE243114	A bioinformatic pipeline for analysis of M.EcoGII methylation footprint PacBio long-read sequence data	Other	Escherichia coli Saccharomyces cerevisiae	12	BAM BED BIGWIG	David Clark	Mar 15, 2024
GSE28565	RNAs binding to the nucleoid protein HU in Escherichia coli	Expression profiling by array	Escherichia coli	3	BAR CEL	Andrei Nikolai Trostel	Dec 07, 2012
GSE42821	Tiling microarray analysis of gene expression profile of Escherichia coli galT mutant cells under D-galactose-stressed condition	Expression profiling by genome tiling array	Escherichia coli	2	BAR CEL TXT	Andrei Nikolai Trostel	Dec 17, 2013
GSE85334	Gal R regulates gene expression while arranging chromosome structure.	Expression profiling by genome tiling array	Escherichia coli	4	BAR CEL XLS	Andrei Nikolai Trostel	Jan 25, 2017
GSE92734	Genome-wide Transcription-coupled Repair in E.coli is Mediated by the Mfd Protein	Other	Escherichia coli	8	BED SRA Run Selector	Ogun Adebali	Feb 08, 2017
GSE98659	Natural RNA polymerase aptamers regulate transcription in E. coli [SELEX]	Other	Escherichia coli	1	BED SRA Run Selector	Philipp Rescheneder	Jun 01, 2017
GSE98661	Natural RNA polymerase aptamers regulate transcription in E. coli	Other Expression profiling by high throughput sequencing	Escherichia coli	3	BED BW	Philipp Rescheneder	Jun 01, 2017
GSE104505	CRP and FIS	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli str. K-12 substr. MG1655	36	BED	Parul Singh	Oct 03, 2017
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq	Other	Arabidopsis thaliana Caenorhabditis elegans Cereibacter sphaeroides Danio rerio Drosophila melanogaster Escherichia coli Homo sapiens Leishmania major Mus musculus Plasmodium falciparum Saccharomyces cerevisiae Trypanosoma brucei	24	BED BEDGRAPH SRA Run Selector	Giovanni Marsico	Aug 01, 2018
GSE117939	High throughput in vivo mapping of RNA accessible interfaces to identify functional sRNA binding sites	Other	Escherichia coli	12	BED FA SRA Run Selector	Mia Mihailovic	Oct 06, 2018
GSE119094	Single-nucleotide-resolution sequencing of human N6-methyldeoxyadenosine reveals strand-asymmetric clusters associated with SSBP1 in the mitochondrial genome	Other	Escherichia coli Homo sapiens Salmonella enterica subsp. enterica serovar Typhimurium	11	BED BEDGRAPH SRA Run Selector	Wee Siong Sho Goh	Nov 09, 2018
GSE129936	The extruded non-template strand determines the architecture of R-loops	Methylation profiling by high throughput sequencing	Escherichia coli	2	BED SRA Run Selector	Frederic Chedin	Apr 23, 2019
GSE140614	Ruler elements in chromatin remodelers set nucleosome array spacing and phasing	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae Schizosaccharomyces pombe	450	BED BW CSV RDS TAB TXT SRA Run Selector	Elisa Oberbeckmann	Feb 10, 2020
GSE153815	Global timeospatial map of RNA polymerase in Escherichia coli	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Escherichia coli	40	BED TXT SRA Run Selector	Thøger Jensen Krogh	Jul 06, 2020
GSE155677	Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Other	Escherichia coli Mus musculus	36	BED BEDGRAPH BW FA MTX PICKLE TAR TSV TXT SRA Run Selector	Boyan Bonev	Jan 27, 2022
GSE157512	Multimodal multiscale analysis reveals flexible DNA contacts of bacterial nucleoprotein filaments	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	36	BED BEDGRAPH SRA Run Selector	Robert Landick	Sep 01, 2023
GSE174575	Bacterial Heterochromatin Formation Through Liquid-Liquid Phase Separation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	36	BED CSV TSV SRA Run Selector	Lydia Freddolino	Dec 23, 2021
GSE181416	The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Escherichia coli Homo sapiens	46	BED FA TXT	Daniel Sunwook Kim	Aug 04, 2021
GSE183114	Selective recruitment of the AAA+ ATPase TnsC increases the fidelity of Type I-F CRISPR RNA-guided transposition	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli	31	BED BW XLSX SRA Run Selector	Samuel Sternberg	Oct 31, 2021