GEO Browser - GEO

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224 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Saccharomyces cerevisiae		WIG
GSE169088	3D genomics across the tree of life reveals condensin II as a determinant of architecture type	Other	Acropora millepora Aedes aegypti Agaricus bisporus Aplysia californica Arachis hypogaea Branchiostoma lanceolatum Caenorhabditis elegans Chiloscyllium punctatum Ciona intestinalis Clonorchis sinensis Cristatella mucedo Culex quinquefasciatus Drosophila melanogaster Gallus gallus Homo sapiens Hypsibius dujardini Lethenteron camtschaticum Muntiacus muntjak Muntiacus reevesi Notamacropus eugenii Pleurobrachia bachei Pygocentrus nattereri Python bivittatus Saccharomyces cerevisiae Strongylocentrotus purpuratus Triticum aestivum Xenopus laevis	32	BEDPE FASTA HIC VCF WIG SRA Run Selector	Olga Dudchenko	Apr 23, 2021
GSE145904	40S ribosome profiling reveals distinct roles for Tma20/Tma22 (MCT-1/DENR) and Tma64 (eIF2D) in 40S subunit recycling	Other	Saccharomyces cerevisiae	28	WIG SRA Run Selector	Nicholas R Guydosh	Mar 01, 2021
GSE229473	5P-Seq analysis of wt and new1-knockout yeast strain as well as New1:80S pull-down samples	Other	Saccharomyces cerevisiae	20	WIG	Vasili Hauryliuk	Apr 12, 2023
GSE80831	A Basic Domain in the Histone H2B N-terminal Tail is Important for Nucleosome Assembly by FACT	Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae	6	CEL WIG	John J. Wyrick	Aug 10, 2016
GSE117881	A Role for Chromatin Remodeling in Cohesin Loading onto Chromosomes	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	WIG SRA Run Selector	Sofía Muñoz	Mar 19, 2019
GSE44879	A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription	Expression profiling by genome tiling array Genome binding/occupancy profiling by genome tiling array Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	185	BAR CEL WIG	Harm van Bakel	May 22, 2013
GSE44878	A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription [Nuc-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	16	WIG SRA Run Selector	Harm van Bakel	May 22, 2013
GSE249628	A fluorescent assay for cryptic transcription in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C	14	WIG	LeAnn Howe	Dec 08, 2023
GSE249469	A fluorescent assay for cryptic transcription in Saccharomyces cerevisiae [MNase-seq]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	FA WIG	LeAnn Howe	Dec 06, 2023
GSE192701	A role for the Saccharomyces cerevisiae Rtt109 histone acetyltransferase in R-loop homeostasis and associated genome instability	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	14	WIG SRA Run Selector	Andrés Aguilera	Jul 13, 2022
GSE83648	A role of RPA in replication coupled nucleosome assembly	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	40	WIG SRA Run Selector	Qing Li	Jan 27, 2017
GSE75322	Accurate prediction of cellular co-translational folding indicates proteins can switch from post- to co-translational folding	Other	Saccharomyces cerevisiae	2	TAB WIG SRA Run Selector	Nabeel Ahmed	Jan 30, 2016
GSE121067	Analysis by Mnase-seq of the chromatin structure of wild type cells and cells in which chromatin structure is perturbed (histone H4 depletion) in the presence or absence of the kleisin subunit of cohesin, Scc1	Methylation profiling by high throughput sequencing	Saccharomyces cerevisiae	8	WIG SRA Run Selector	Eloisa Andujar	Aug 06, 2019
GSE183622	Analysis of alkylation damage formation and base excision repair at yeast transcription factor binding sites	Other	Saccharomyces cerevisiae	12	WIG SRA Run Selector	Peng Mao	Dec 31, 2021
GSE101368	Antisense transcriptional interference mediates tight gene repression in budding yeast	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	14	WIG SRA Run Selector	Alain Jacquier	Jul 23, 2018
GSE171067	BET family members Bdf1/2 modulate global transcription initiation and elongation in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	264	CSV WIG	Rafal Donczew	Jun 09, 2021
GSE171062	BET family members Bdf1/2 modulate global transcription initiation and elongation in Saccharomyces cerevisiae (ChEC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	122	WIG SRA Run Selector	Rafal Donczew	Jun 09, 2021
GSE171063	BET family members Bdf1/2 modulate global transcription initiation and elongation in Saccharomyces cerevisiae (ChIP-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	100	WIG SRA Run Selector	Rafal Donczew	Jun 09, 2021
GSE104486	Binding to RNA regulates Set1 function	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	12	BW WIG	Abdessamad EL KAOUTARI	Oct 03, 2017
GSE104485	Binding to RNA regulates Set1 function [CRAC-seq]	Other	Saccharomyces cerevisiae	4	WIG SRA Run Selector	Abdessamad EL KAOUTARI	Oct 03, 2017