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224 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Saccharomyces cerevisiae		WIG
GSE15188	Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae	3	TXT WIG SRA Run Selector	Ghia Euskirchen	Jul 15, 2009
GSE21960	The role of nucleosome positioning in the evolution of gene regulation	Expression profiling by array Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Debaryomyces hansenii Kluyveromyces lactis Lachancea kluyveri NRRL Y-12651 Lachancea waltii Nakaseomyces glabratus Naumovozyma castellii Saccharomyces bayanus Saccharomyces cerevisiae Saccharomyces mikatae Saccharomyces paradoxus Yarrowia lipolytica	61	TXT WIG	Alex M Tsankov	Jul 06, 2010
GSE22211	Genome-wide nucleosome position data for 12 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Debaryomyces hansenii Kluyveromyces lactis Lachancea kluyveri NRRL Y-12651 Lachancea waltii Nakaseomyces glabratus Naumovozyma castellii Saccharomyces bayanus Saccharomyces cerevisiae Saccharomyces mikatae Saccharomyces paradoxus Yarrowia lipolytica	13	TXT WIG SRA Run Selector	Alex M Tsankov	Jul 06, 2010
GSE22393	Genome-wide Measurement of RNA Secondary Structure in Yeast	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	7	FASTA TAB WIG SRA Run Selector	Michael Kertesz	Aug 24, 2010
GSE23712	High-throughput sequencing reveals a simple model of nucleosome energetics	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Saccharomyces cerevisiae	1	TXT WIG	George Locke	Aug 20, 2010
GSE23778	Nucleosome depletion in Saccharomyces cerevisiae terminator	Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae	4	CEL PDF WIG	Xiaochun Fan	Sep 21, 2010
GSE25107	Native elongating transcript sequencing (NET-seq) of wild type Saccharomyces cerevisiae and of DST1, RCO1, SET1, SET2, EAF3 deletion strains	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	7	WIG SRA Run Selector	L. Stirling Stirling Churchman	Jan 19, 2011
GSE27307	H3 Lysine 4 Is Acetylated at Active Gene Promoters and Is Regulated by H3 Lysine 4 Methylation	Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae	5	CEL WIG	Benoit Guillemette	Feb 15, 2011
GSE28298	Tripartite organization of centromeric chromatin in budding yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	28	BAM PDF SAM WIG	Jorja Henikoff	Dec 07, 2011
GSE28734	Genome wide H3K9ac and SAGA occupancy at OX growth phase and RC quiescent phase of yeast metabolic cycle	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	8	WIG SRA Run Selector	Ling Cai	May 19, 2011
GSE28839	Genome-wide nucleosome position data for 3 yeast species	Genome binding/occupancy profiling by high throughput sequencing	Candida albicans Saccharomyces cerevisiae Schizosaccharomyces pombe	7	TXT WIG SRA Run Selector	Alex M Tsankov	Aug 01, 2011
GSE29293	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome [RNA_seq]	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	6	WIG SRA Run Selector	Jason D Lieb	Sep 26, 2012
GSE29294	Effects of Histone H3 depletion on nucleosome occupancy and positioning through the S. cerevisiae genome	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	20	BED TXT WIG	Jason D Lieb	Sep 26, 2012
GSE29506	Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	19	WIG SRA Run Selector	Xu Zhou	Sep 28, 2011
GSE30551	Epigenome characterization at single base-pair resolution	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	7	WIG SRA Run Selector	Jorja Henikoff	Oct 27, 2011
GSE31764	Transcriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-poly(A) termination Pathway: Nrd1, Nab3 and Sen1	Other	Saccharomyces cerevisiae	6	WIG SRA Run Selector	Jeff Corden	Sep 08, 2011
GSE31820	Targets of Ty3 transposition in Saccharomyces cerevisiae	Genome variation profiling by high throughput sequencing	Saccharomyces cerevisiae	2	PDF TXT WIG SRA Run Selector	Suzanne Sandmeyer	Sep 02, 2011
GSE34438	Ribosome profiling of wild-type and loc1- cells in S. cerevisiae	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	4	WIG SRA Run Selector	Suzanne Komili	Jan 01, 2014
GSE34534	Genome-wide analyses of Loc1, Puf6, and Khd1	Expression profiling by array Genome binding/occupancy profiling by array Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	18	GPR WIG	Suzanne Komili	Jan 01, 2014
GSE36045	Conservation of replication timing reveals global and local regulation of replication origin activity.	Genome variation profiling by high throughput sequencing	Saccharomyces arboricola Saccharomyces bayanus Saccharomyces bayanus x Saccharomyces cerevisiae Saccharomyces cerevisiae Saccharomyces paradoxus	10	FA TXT WIG SRA Run Selector	Conrad A Nieduszynski	Jun 19, 2012