GEO Browser - GEO

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1438 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Saccharomyces cerevisiae		SRA Run Selector
GSE68860	Genome-wide single-molecule sequencing of 6-methyladenine in eukaryotes	Third-party reanalysis Methylation profiling by high throughput sequencing	Arabidopsis thaliana Auricularia delicata Caenorhabditis elegans Chlamydomonas reinhardtii Drosophila melanogaster Nannochloropsis oceanica Saccharomyces cerevisiae	11	BW CSV GFF SRA Run Selector	Denis Tolkunov	Sep 01, 2017
GSE75897	Improved ribosome-footprint and mRNA measurements provide insights into dynamics and regulation of yeast translation	Third-party reanalysis Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	3	TXT SRA Run Selector	David Eric Weinberg	Feb 10, 2016
GSE94851	Genome-wide maps of TBP-associated factor (TAF, Taf1) in S.cerevisiae	Third-party reanalysis Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	12	BEDGRAPH SRA Run Selector	Yoo Jin Joo	Feb 14, 2017
GSE112636	Diversity of cytosine methylation across the fungi tree of life	Third-party reanalysis Methylation profiling by high throughput sequencing	Agaricus bisporus Aspergillus flavus Aureobasidium pullulans Botrytis cinerea Candida albicans Candidozyma auris Clavispora lusitaniae Coemansia reversa Coemansia spiralis Coprinopsis cinerea Cordyceps militaris Cryptococcus neoformans var. grubii Flammula alnicola Fusarium fujikuroi Hesseltinella vesiculosa Heterobasidion irregulare Kirkomyces cordensis Laccaria bicolor Lobosporangium transversale Metarhizium robertsii Microbotryum lychnidis-dioicae Mixia osmundae Neurospora crassa Parasitella parasitica Phanerodontia chrysosporium Phycomyces blakesleeanus Plenodomus lingam Pleurotus ostreatus Podospora anserina Postia placenta Pseudogymnoascus destructans Pyricularia oryzae KJ201 Radiomyces spectabilis Saccharomyces cerevisiae Spinellus fusiger Sporobolomyces roseus Syncephalis fuscata Tilletiopsis washingtonensis Uncinocarpus reesii Wolfiporia cocos	31	TSV TXT XLS SRA Run Selector	Robert J Schmitz	Feb 18, 2019
GSE13648	Global identification of yeast chromosome interactions using genome conformation capture	Other	Saccharomyces cerevisiae	2	TXT SRA Run Selector	Justin M. O'Sullivan	Jul 21, 2009
GSE13750	Genome-Wide Analysis In Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	8	TXT SRA Run Selector	Nicholas T Ingolia	Feb 12, 2009
GSE21739	Comprehensive comparative analysis of strand-specific RNA sequencing methods	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	15	BEDGRAPH TXT SRA Run Selector	Joshua Z Levin	Aug 15, 2010
GSE25107	Native elongating transcript sequencing (NET-seq) of wild type Saccharomyces cerevisiae and of DST1, RCO1, SET1, SET2, EAF3 deletion strains	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	7	WIG SRA Run Selector	L. Stirling Stirling Churchman	Jan 19, 2011
GSE31764	Transcriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-poly(A) termination Pathway: Nrd1, Nab3 and Sen1	Other	Saccharomyces cerevisiae	6	WIG SRA Run Selector	Jeff Corden	Sep 08, 2011
GSE33018	Chromosome positioning and the clustering of functionally related loci in yeast is driven by chromosomal interactions	Other	Saccharomyces cerevisiae	2	TXT SRA Run Selector	Justin M. O'Sullivan	Jul 19, 2012
GSE33073	The Saccharomyces cerevisiae genome is highly connected by inter- and intra- chromosomal interactions	Other	Saccharomyces cerevisiae	1	TXT SRA Run Selector	Justin M. O'Sullivan	Jan 17, 2013
GSE33074	Inter- and intra- chromosomal interactions change on a global scale according to the metabolic regime employed by Saccharomyces cerevisiae	Other	Saccharomyces cerevisiae	2	TXT SRA Run Selector	Justin M. O'Sullivan	Jan 17, 2013
GSE33786	Intrinsic Coupling of Lagging Strand Synthesis to Chromatin Assembly	Other	Saccharomyces cerevisiae	4	BED SRA Run Selector	Iestyn Whitehouse	Feb 21, 2012
GSE33986	Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots	Other	Saccharomyces cerevisiae	2	TXT SRA Run Selector	Sarah Wheelan	Jan 01, 2012
GSE34438	Ribosome profiling of wild-type and loc1- cells in S. cerevisiae	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	4	WIG SRA Run Selector	Suzanne Komili	Jan 01, 2014
GSE36063	A map of nucleosome positions in yeast at base-pair resolution	Other	Saccharomyces cerevisiae	6	TXT SRA Run Selector	Ji-Ping Wang	May 17, 2012
GSE39074	Roles for Transcript Leaders in Translation and mRNA Decay Revealed by Transcript Leader Sequencing	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	11	TXT WIG SRA Run Selector	Joshua A Arribere	Apr 03, 2013
GSE39680	Genome-wide measurement of RNA folding energies	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	10	TXT SRA Run Selector	Kun Qu	Sep 09, 2012
GSE40046	Transcriptome-wide Analysis of Exosome Targets in the Budding Yeast Saccharomyces cerevisiae	Other	Saccharomyces cerevisiae	16	WIG SRA Run Selector	Grzegorz Kudla	Sep 25, 2012
GSE40696	Quantitative, genome-wide analysis of eukaryotic replication initiation and termination	Other	Saccharomyces cerevisiae	5	SGR TAB TAR SRA Run Selector	Iestyn Whitehouse	Feb 28, 2013