Rapid and Inexpensive Preparation of Genome-Wide Nucleosome Footprints from Model and Non-Model Organisms

Centromere-Like Regions in Budding Yeast

Quantitative, genome-wide analysis of eukaryotic replication initiation and termination

A transcriptome-wide atlas of RNP compositions reveals diverse classes of mRNAs and lncRNAs

HDACs act on ribosomal DNA to control the yeast replication program and the competition between origins for limiting initiation factors [ChIP-seq]

HDACs act on ribosomal DNA to control the yeast replication program and the competition between origins for limiting initiation factors

Replication-coupled nucleosome assembly and positioning by ATP-dependent chromatin remodeling enzymes

Characterization of H3 density, H3 or H4 acetylation, Rpd3 binding, TFIIB binding, and Rpb3 (pol II) binding in wild type and rpd3 cells as they transition from logarithmic growth to diauxic shift to quiescence [ChIP-Seq]

Rpd3 drives transcriptional quiescence

Post-licensing specification of eukaryotic replication origins by facilitated Mcm2-7 sliding along DNA

Loss of the yeast SR protein Npl3 alters gene expression due to transcription readthrough

Pif1-family helicases cooperate to suppress widespread replication fork arrest at tRNA genes

robust statistical modeling improves sensitivity of high-throughput rnA structure probing experiments

Nucleosome occupancy as a novel chromatin parameter for replication origin functions

A study of Mediator subunit enhancer-promoter binding

Evidence that Mediator is essential for Pol II transcription but not a required component of the preinitiation complex in vivo

Maturation of the 90S pre-ribosome requires Mrd1 dependent U3 snoRNA and 35S pre-rRNA structural rearrangements

Genome-wide maps of chromatin remodeling factors Isw2 and Ino80 in asynchronously growing yeast cells

Genome-wide maps of histone H3 in asynchronously growing yeast cells

Genome-wide maps of RNA Polymerase I and III in asynchronously growing yeast cells