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170 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Saccharomyces cerevisiae		BEDGRAPH
GSE74454	Synchronized translation programs across cellular compartments	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	36	XLSX WIG TXT BEDGRAPH SRA Run Selector	Mary T Couvillion	May 11, 2016
GSE95633	MINC Regulates Pervasive Transcription in Yeast and Mammals	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus Saccharomyces cerevisiae	117	XLSX TXT BEDGRAPH SRA Run Selector	Siavash K Kurdistani	Jul 08, 2017
GSE124132	Yeast sirutin family members maintain trannscription homeostasis to ensure genome stability	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	27	XLSX TXT BW BEDGRAPH SRA Run Selector	Jessica Lauren Feldman	May 04, 2019
GSE153497	RNA degradation analysis reveals ribosome dynamics in complex microbiome samples	Other	Alistipes finegoldii Bacillus amyloliquefaciens Bacillus subtilis Caulobacter vibrioides Cryptococcus neoformans Enterococcus faecalis Escherichia coli Hoylesella timonensis Lactiplantibacillus plantarum Limosilactobacillus fermentum Limosilactobacillus reuteri Listeria monocytogenes Parabacteroides merdae Saccharomyces cerevisiae Salmonella enterica Segatella copri Staphylococcus aureus Synechocystis sp. PCC 6803 compost metagenome human feces metagenome	199	XLSX TXT BEDGRAPH SRA Run Selector	Vicent Pelechano	Mar 24, 2023
GSE156040	Two pathways drive meiotic chromosome axis assembly in Saccharomyces cerevisiae	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	161	XLSX CSV BROADPEAK BEDGRAPH BED SRA Run Selector	Andreas Hochwagen	Apr 08, 2022
GSE160350	Genetic interaction mapping informs integrative structure determination of protein complexes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	104	XLSX BEDGRAPH SRA Run Selector	Hannes Braberg	Dec 10, 2020
GSE174587	Puf6 primes nuclear export of 60S pre-ribosomes at low temperature	Other	Saccharomyces cerevisiae	2	XLSX BEDGRAPH SRA Run Selector	Sander Granneman	Jun 25, 2021
GSE227761	Context dependent function of transcriptional regulator Rap1 in gene silencing and activation [ChIP-seq timecourse]	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae Saccharomyces paradoxus	24	XLSX BEDGRAPH	Eliana Rose Bondra	May 09, 2023
GSE229803	Regulation of transcriptional interference by the Swi/Snf complex [TL-seq]	Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	22	XLSX BEDGRAPH	Elçin Ünal	Aug 07, 2023
GSE44200	Mot1 redistributes TBP from TATA-containing to TATA-less promoters	Genome binding/occupancy profiling by high throughput sequencing	Drosophila melanogaster Saccharomyces cerevisiae	20	WIG BEDGRAPH BED SRA Run Selector	Jorja Henikoff	Oct 21, 2013
GSE44312	Gene expression is a circular process	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	4	WIG TAB BEDGRAPH SRA Run Selector	Gal Haimovich	May 23, 2013
GSE67453	ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	57	WIG RTF BEDGRAPH BED SRA Run Selector	Jorja Henikoff	Oct 22, 2015
GSE109235	Distinct patterns of histone acetyltransferase and Mediator deployment at yeast protein-coding genes	Genome binding/occupancy profiling by high throughput sequencing Other	Saccharomyces cerevisiae	70	WIG BW BEDGRAPH SRA Run Selector	Maria Jessica Bruzzone	Aug 15, 2018
GSE109343	Lso2 is a conserved ribosome-bound protein required for translational recovery in yeast	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae	25	WIG TXT GFF FASTA BEDGRAPH BED SRA Run Selector	Yinuo Wang	Sep 12, 2018
GSE220880	MNase titration-Seq of Saccharomyces cerevisiae.	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	22	WIG BIGWIG BEDGRAPH	Ajaz ul Hamid Wani	Feb 08, 2024
GSE21739	Comprehensive comparative analysis of strand-specific RNA sequencing methods	Other Expression profiling by high throughput sequencing	Saccharomyces cerevisiae	15	TXT BEDGRAPH SRA Run Selector	Joshua Z Levin	Aug 15, 2010
GSE28269	Patterns and mechanisms of ancestral histone protein inheritance in budding yeast	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	16	TXT BEDGRAPH SRA Run Selector	Assaf Weiner	Oct 06, 2011
GSE52119	Evolution of Translation Regulation in budding Yeast	Expression profiling by high throughput sequencing Other	Saccharomyces cerevisiae Saccharomyces cerevisiae x Saccharomyces paradoxus Saccharomyces paradoxus	12	TXT BEDGRAPH BED SRA Run Selector	Charles Joel McManus	Dec 04, 2013
GSE52863	Meiotic recombination cold spots in chromosomal cohesion sites	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by genome tiling array	Saccharomyces cerevisiae Schizosaccharomyces pombe	12	TXT CEL BEDGRAPH BAR	Masaru Ito	Mar 31, 2014
GSE72106	Genomic nucleosome organization reconstituted with pure proteins	Genome binding/occupancy profiling by high throughput sequencing	Saccharomyces cerevisiae	92	TXT BEDGRAPH SRA Run Selector	Bongsoo Park	Aug 14, 2016