GEO Browser - GEO

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1177 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Oryza sativa
GSE71553	High Density Rice Array (HDRA6.4) developed by the McCouch-Rice Lab at Cornell University	Genome variation profiling by SNP array	Oryza sativa	1568	CEL CSV	Susan R. McCouch	Feb 25, 2016
GSE233456	Life-cycle multiomics of rice shoots reveals growth stage-specific effects of drought stress and time-lag drought responses	Expression profiling by high throughput sequencing	Oryza sativa	576	TXT	FUMIYUKI SOMA	Nov 30, 2023
GSE142570	Integrative analysis of reference epigenomes in rice	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Oryza sativa	513	BW TXT	Liang Xie	Apr 25, 2020
GSE74793	Rice gene expression in heat stress and dehydration stress - time series	Expression profiling by high throughput sequencing	Oryza sativa	475	TXT SRA Run Selector	Christoph Hafemeister	Jan 01, 2016
GSE219071	mDRIP-seq is a high-throughput method for quantitative R-loop landscape profiling	Other Expression profiling by high throughput sequencing	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	384	BW TXT	Changbin Sun	Jun 11, 2024
GSE98455	Variation in transcriptional responses to salt stress in rice	Expression profiling by high throughput sequencing	Oryza sativa	368	TXT SRA Run Selector	Chi Zhang	Jan 01, 2018
GSE219068	mDRIP-seq: a high-throughput method for R-loop mapping and quantitative assessment	Other	Arabidopsis thaliana Escherichia coli Homo sapiens Mus musculus Oryza sativa Saccharomyces cerevisiae	356	BW	Changbin Sun	Jun 11, 2024
GSE142462	Integrative analysis of reference epigenomes in rice [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Oryza sativa	355	BW SRA Run Selector	Liang Xie	Apr 25, 2020
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282	BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018
GSE73609	Rice gene expression in irrigated and rainfed fields during two seasons	Expression profiling by high throughput sequencing	Oryza sativa	239	TXT SRA Run Selector	Christoph Hafemeister	Oct 01, 2015
GSE22564	A global analysis of QTLs for expression variations in rice shoot at early seedling stage	Expression profiling by array	Oryza sativa Oryza sativa Indica Group	226	CEL	Jia Wang	Jun 24, 2011
GSE36040	Diurnal and circadian gene expression profile of leaf throughout the entire growth of rice in the field	Expression profiling by array	Oryza sativa Oryza sativa Japonica Group	225	TXT	Yutaka Sato	Dec 03, 2012
GSE13161	A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies	Expression profiling by array	Oryza sativa	220	GPR	Timothy Nelson	Oct 16, 2008
GSE49020	A global analysis of QTLs for expression variations in rice flag leaf at heading date	Expression profiling by array	Oryza sativa	216	CEL	wang Jia	Feb 05, 2014
GSE21494	Transcriptomic analysis of rice	Expression profiling by array	Oryza sativa Oryza sativa Japonica Group	209	TXT	Baltazar Antonio	Jan 13, 2011
GSE19024	Dissecting the developmental transcriptomes of rice	Expression profiling by array	Oryza sativa Oryza sativa Indica Group	190	CEL	Weibo Xie	Jan 20, 2010
GSE128434	The prevalence, evolution and chromatin signatures of plant regulatory elements	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Asparagus officinalis Brachypodium distachyon Eutrema salsugineum Glycine max Hordeum vulgare Oryza sativa Phaseolus vulgaris Populus trichocarpa Setaria viridis Sorghum bicolor Spirodela polyrhiza Zea mays	170	BW SRA Run Selector	Robert J Schmitz	Sep 19, 2019
GSE62896	Global and local gene expression in rice leaves and roots challenged by Magnaporthe oryzae	Expression profiling by array	Oryza sativa	168	TXT	Eiichi Minami	Feb 20, 2015
GSE14717	Direct calibration of PICKY-designed microarrays	Other	Oryza sativa synthetic construct	165	GPR	Hui-Hsien Chou	Oct 22, 2009
GSE243806	aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana Brassica napus Citrus sinensis Dianthus caryophyllus Glycine max Oryza sativa Populus Saccharum officinarum Solanum lycopersicum Solanum tuberosum Zea mays	162	BROADPEAK NARROWPEAK	Wenying Zhong	Apr 28, 2024