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14 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Solanum lycopersicum			NARROWPEAK
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282		BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018
GSE155317	DNA features beyond the transcription factor binding sites specify target recognition by plant bHLHs [DAP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Marchantia polymorpha Solanum lycopersicum	27		NARROWPEAK SRA Run Selector	Jose M. Franco-Zorrilla	Dec 01, 2020
GSE155321	DNA features beyond the transcription factor binding sites specify target recognition by plant bHLHs	Genome binding/occupancy profiling by high throughput sequencing Genome binding/occupancy profiling by array	Arabidopsis thaliana Marchantia polymorpha Solanum lycopersicum	35		NARROWPEAK TXT	Jose M. Franco-Zorrilla	Dec 01, 2020
GSE220115	GLK ChIP-seq and ATAC-seq data in Arabidopsis, Tobacco, Tomato, Rice and Maize.	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Nicotiana benthamiana Oryza sativa Japonica Group Solanum lycopersicum Zea mays	20		BW NARROWPEAK	Sibo REN	Dec 08, 2022
GSE243804	aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Brassica napus Citrus sinensis Dianthus caryophyllus Glycine max Oryza sativa Populus Saccharum officinarum Solanum lycopersicum Solanum tuberosum Zea mays	152		BROADPEAK NARROWPEAK	Wenying Zhong	Apr 28, 2024
GSE243806	aChIP: efficient, sensitive, robust ChIP-seq for economically important plant organs	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Arabidopsis thaliana Brassica napus Citrus sinensis Dianthus caryophyllus Glycine max Oryza sativa Populus Saccharum officinarum Solanum lycopersicum Solanum tuberosum Zea mays	160		BROADPEAK NARROWPEAK	Wenying Zhong	Apr 28, 2024
GSE206358	HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	32		BIGWIG NARROWPEAK	Jing An	Jan 03, 2023
GSE206359	HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions [DAP-seq]	Other	Solanum lycopersicum	3		BIGWIG NARROWPEAK	Jing An	Jan 03, 2023
GSE206365	HSFA1a controls plant heat stress response through its action on the 3D chromatin reorganization of enhancer-promoter interactions.	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Solanum lycopersicum	79		BIGWIG NARROWPEAK TXT	Jing An	Jan 03, 2023
GSE210149	A SlCLV3-SlWUS module regulates auxin and ethylene homeostasis in low light–induced tomato flower abscission	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	2		BW NARROWPEAK	lina cheng	Aug 03, 2022
GSE243908	THE EPIGENOME PLAYS A MAJOR ROLE IN TOMATO 3D CHROMATIN ORGANIZATION [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	9		BIGWIG BROADPEAK NARROWPEAK TXT	Xiaoning HE	Aug 05, 2024
GSE243911	THE EPIGENOME PLAYS A MAJOR ROLE IN TOMATO 3D CHROMATIN ORGANIZATION	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Solanum lycopersicum	17		BIGWIG BROADPEAK NARROWPEAK	Xiaoning HE	Aug 05, 2024
GSE245525	KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Solanum lycopersicum	28		BIGWIG BROADPEAK NARROWPEAK	Jing An	Jul 11, 2024
GSE245529	KRYPTONITE shapes TAD-like boundaries through the control of H3K9ac	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Solanum lycopersicum	51		BIGWIG BROADPEAK NARROWPEAK	Jing An	Jul 11, 2024