GEO Browser - GEO

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83 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Arabidopsis thaliana		NARROWPEAK
GSE60141	A Comprehensive Atlas of Arabidopsis Regulatory DNA [DAP-seq]	Other	Arabidopsis thaliana Zea mays	936	NARROWPEAK SRA Run Selector	Joseph R Ecker	May 25, 2016
GSE60142	The DNA affinity purification DAP-Seq assay [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	NARROWPEAK SRA Run Selector	Joseph R Ecker	May 25, 2016
GSE60143	In vitro, genomic context identification of transcription factor binding sites	Other Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana Zea mays	941	NARROWPEAK	Joseph R Ecker	May 25, 2016
GSE78727	Genome-wide binding sites for Arabidopsis REPLUMLESS	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	NARROWPEAK TXT XLS SRA Run Selector	Robert Sablowski	Sep 22, 2016
GSE81200	ENAP1 is involoved in the Histone H3K23 acetylation- and EIN3- mediated ethylene response	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	16	BEDGRAPH NARROWPEAK SRA Run Selector	Hong Qiao	Sep 07, 2017
GSE85651	Genome-wide mapping of the Arabidopsis thaliana heat shock transcription factor A1b binding sites under non-stress and heat stress conditions [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	16	BED NARROWPEAK XLS SRA Run Selector	Philip M Mullineaux	May 30, 2018
GSE94926	Genome-wide binding sites for RGA in Arabidopsis inflorescence apices	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	NARROWPEAK TXT SRA Run Selector	Robert Sablowski	Aug 15, 2017
GSE95765	Genome-wide maps of R-loops in Arabidopsis	Other	Arabidopsis thaliana	5	BW NARROWPEAK SRA Run Selector	li kuan	May 31, 2017
GSE102984	ENAP1 is involoved in the EIN3- mediated ethylene response	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	8	NARROWPEAK SRA Run Selector	Hong Qiao	Aug 21, 2019
GSE108765	Profiling of N6-methyladenosine (m6A) in Arabidopsis wild type and ABI3:MTA	Expression profiling by high throughput sequencing	Arabidopsis thaliana	8	NARROWPEAK SRA Run Selector	Stephen James Anderson	Nov 09, 2018
GSE108852	N6-methyladenosine-mediated structural changes are associated with transcript cleavage and stability in Arabidopsis	Expression profiling by high throughput sequencing Other	Arabidopsis thaliana	50	NARROWPEAK TXT	Stephen James Anderson	Nov 09, 2018
GSE114950	The effects of Arabidopsis genome duplication on the chromatin organization and transcriptional regulation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Other	Arabidopsis thaliana	28	BROADPEAK MATRIX NARROWPEAK TXT SRA Run Selector	Hui Zhang	May 25, 2019
GSE116334	Profiling of N6-methyladenosine (m6A) in salt-treated and control Arabidopsis	Other	Arabidopsis thaliana	8	NARROWPEAK SRA Run Selector	Stephen James Anderson	Nov 09, 2018
GSE116581	fruitENCODE: An encyclopedia of DNA elements for fruit ripening	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Arabidopsis thaliana Carica papaya Citrullus lanatus Cucumis melo Cucumis sativus Fragaria vesca Malus domestica Musa acuminata AAA Group Oryza sativa Prunus persica Pyrus x bretschneideri Solanum lycopersicum Vitis vinifera	282	BW NARROWPEAK TBI TXT SRA Run Selector	Silin Zhong	Jul 04, 2018
GSE118136	Cell-type specific transcriptome and histone modification dynamics during in situ cellular reprogramming in the Arabidopsis stomatal lineage [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	16	BW NARROWPEAK SRA Run Selector	Kenneth Birnbaum	Oct 08, 2019
GSE120664	Targeted reprogramming of H3K27me3 resets epigenetic memory in plant paternal chromatin	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	19	BROADPEAK BW NARROWPEAK SRA Run Selector	Michael Borg	Mar 17, 2020
GSE122455	AT-hook transcription factors repress petiole growth by antagonizing PIF4 [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	BW NARROWPEAK SRA Run Selector	David Seth Favero	Mar 19, 2020
GSE122456	AT-hook transcription factors repress petiole growth by antagonizing PIF4	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	15	BW NARROWPEAK TXT	David Seth Favero	Mar 19, 2020
GSE122771	ATAC-seq on 14-d-old WT col-0 Arabidopsis thaliana roots carrying INTACT	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	3	BED NARROWPEAK SRA Run Selector	Ofir Hakim	Dec 23, 2018
GSE122772	Regulatory chromatin landscape in Arabidopsis thaliana roots uncovered by coupling INTACT and ATAC-seq	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	6	BED NARROWPEAK	Ofir Hakim	Dec 23, 2018