GEO Browser - GEO

Series

Samples

Platforms

DataSets

241 series

Export

Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Arabidopsis thaliana		BED
GSE72735	Genome-wide profiling of SWI/SNF chromatin remodeler BRAHMA and Histone H3 lysine demethyalse Relative of Early Flowering 6 (REF6) in Arabidopsis [ChIP-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	27	BED SRA Run Selector	Lei Gao	Mar 28, 2016
GSE161515	BRD1, BRD2 and BRD13 are core subunits of Arabidopsis SWI/SNF complexes [ChIP-seq]	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	30	BED SRA Run Selector	yaoguang yu	Mar 22, 2021
GSE161595	BRD1/2/13 are new core subunits of Arabidopsis SWI/SNF complexes	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	42	BED	yaoguang yu	Mar 22, 2021
GSE188141	Arabidopsis mutants	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	41	BED BW	li peng	Feb 22, 2023
GSE233416	Genome-wide profiling of BRAHMA (BRM), BZR1, H3K4me3, H3K27me3, and H4K5ac with indicated growth conditions	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis Arabidopsis thaliana	28	BED BIGWIG	Tao Zhu	Jan 19, 2024
GSE38113	Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata	Expression profiling by genome tiling array Expression profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	7	BED CEL	Felix Ott	May 22, 2012
GSE75071	On the Origin and Evolutionary Consequences of Gene Body DNA Methylation	Expression profiling by high throughput sequencing Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Third-party reanalysis	Arabidopsis lyrata Arabidopsis thaliana Brassica oleracea Brassica rapa Capsella rubella Eutrema salsugineum	44	BED TSV SRA Run Selector	Robert J Schmitz	Jul 11, 2016
GSE94787	A small RNA pathway mediates allelic dosage in endosperm [sRNA-seq]	Non-coding RNA profiling by high throughput sequencing	Arabidopsis lyrata Arabidopsis thaliana	49	BED FA TXT SRA Run Selector	Mary Gehring	Dec 15, 2017
GSE15725	Chromosomal duplication in the grandifolia-D mutants of Arabidopsis thaliana, tiling array data	Genome variation profiling by genome tiling array	Arabidopsis thaliana	1	BAR BED CEL	Nathalie Gonzalez	Jun 02, 2009
GSE15726	Chromosomal duplication in the grandifolia-D mutants of Arabidopsis thaliana	Expression profiling by array Genome variation profiling by genome tiling array	Arabidopsis thaliana	13	BAR BED CEL	Nathalie Gonzalez	Jun 02, 2009
GSE16940	An effective approach for identification of in vivo protein–DNA binding sites from paired-end ChIP-Seq data	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	1	BED TXT SRA Run Selector	dabing zhang	Jun 04, 2010
GSE21301	Orchestration of development by the bifunctional transcription factor, APETALA2	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED GFF SRA Run Selector	Felix Ott	Apr 13, 2010
GSE21781	Mapping origins of replication in Arabidopsis thaliana: Examination of BrdU labeled DNA and unlabeled DNA in one cell type	Other	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Hume Stroud	Nov 06, 2011
GSE21828	Mapping origins of replication in Arabidopsis thaliana	Other Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana	5	BAR BED CEL TXT	Hume Stroud	Feb 06, 2011
GSE22276	Genome-wide maps of histone modifications in Arabidopsis thaliana	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by array	Arabidopsis thaliana	20	BED GPR SRA Run Selector	Misook Ha	Feb 02, 2011
GSE23774	Genome wide BZR1 binding site analysis in Arabidopsis	Genome binding/occupancy profiling by genome tiling array	Arabidopsis thaliana	1	BAR BED BPMAP CEL TXT	Yu Sun	Dec 31, 2010
GSE24568	A biophysical DNA binding model for the LEAFY transcription factor reveals the evolutionary fluidity of its binding sites	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Felix Ott	May 13, 2011
GSE25022	sRNA populations of 2 week old seedlings from Arabidopsis ecotypes C24, Ler, and their two reciprocal F1 hybrids	Non-coding RNA profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Michael Groszmann	Jan 12, 2011
GSE25135	Brassinosteroid (BR) plant hormone signaling	Genome binding/occupancy profiling by genome tiling array Expression profiling by array	Arabidopsis thaliana	10	BAR BED BPMAP CEL TXT	Yu Sun	Dec 31, 2010
GSE26722	Role of class III HD‐ZIP transcription factors in shade signaling	Genome binding/occupancy profiling by high throughput sequencing	Arabidopsis thaliana	4	BED TXT SRA Run Selector	Stephan Wenkel	Jun 01, 2012