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12 series

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Accession	Title	Series type(s)	Organism(s)	Samples	GDS	Supplementary	Contact	Release date
Filter			Bifidobacterium
GSE50506	Molecular interaction of bifidobacteria with kefir grains	Expression profiling by array	Bifidobacterium Bifidobacterium bifidum	4		TXT	Marco Ventura	Jan 01, 2016
GSE38992	Genomic diversity of Bifidobacterium adolescentis group	Genome variation profiling by array	Bifidobacterium Bifidobacterium adolescentis	7		TXT	Marco Ventura	Feb 06, 2013
GSE39047	Genomic diversity of Bifidobacterium pseudocatenulatum group	Genome variation profiling by array	Bifidobacterium Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 Bifidobacterium sp. Bifidobacterium sp. 202	10		TXT	Marco Ventura	Feb 06, 2013
GSE39050	Genomic diversity of Bifidobacterium adolescentis and pseudocatenulatum group	Genome variation profiling by array	Bifidobacterium Bifidobacterium adolescentis Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 Bifidobacterium sp. Bifidobacterium sp. 202	17		TXT	Marco Ventura	Feb 06, 2013
GSE23945	Lactobacillus plantarum IMDO 130201, a wheat sourdough isolate, adapts to growth in wheat sourdough simulation medium at different pH values through differential gene expression	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	10		TXT	Rekin's Janky	Aug 01, 2011
GSE15686	Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	9		TXT	Rekin's Janky	Jul 07, 2010
GSE15691	Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	7		TXT	Rekin's Janky	Jul 07, 2010
GSE15692	Meta-transcriptome analysis of a natural spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation.	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	9		TXT	Rekin's Janky	Jul 07, 2010
GSE15693	Meta-transcriptome analysis of a natural wheat sourdough ecosystem during a 10-day spontaneous, laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	9		TXT	Rekin's Janky	Jul 07, 2010
GSE15803	Analysis of natural wheat and spelt sourdough ecosystem during a 10-day spontaneous laboratory fermentation	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	34		TXT	Rekin's Janky	Jul 07, 2010
GSE9082	DNA validation of LAB 2k v2	Genome variation profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	40		TXT	Rekin's Janky	Oct 20, 2009
GSE9140	RNA validation of LAB 2k v2	Expression profiling by array	Bifidobacterium Brevibacterium linens Companilactobacillus alimentarius Companilactobacillus farciminis Companilactobacillus mindensis Companilactobacillus paralimentarius Enterococcus casseliflavus Enterococcus faecalis Enterococcus faecium Enterococcus hirae Enterococcus mundtii Fructilactobacillus fructivorans Fructilactobacillus sanfranciscensis Furfurilactobacillus rossiae Lacticaseibacillus casei Lacticaseibacillus paracasei Lacticaseibacillus rhamnosus Lactiplantibacillus paraplantarum Lactiplantibacillus pentosus Lactiplantibacillus plantarum Lactobacillus acidophilus Lactobacillus amylovorus Lactobacillus crispatus Lactobacillus delbrueckii Lactobacillus gasseri Lactobacillus helveticus Lactobacillus johnsonii Lactococcus lactis Latilactobacillus curvatus Latilactobacillus sakei Lentilactobacillus buchneri Lentilactobacillus hilgardii Lentilactobacillus parabuchneri Leuconostoc citreum Leuconostoc mesenteroides Leuconostoc pseudomesenteroides Levilactobacillus brevis Limosilactobacillus fermentum Limosilactobacillus frumenti Limosilactobacillus panis Limosilactobacillus pontis Limosilactobacillus reuteri Mammaliicoccus lentus Oenococcus oeni Pediococcus acidilactici Pediococcus pentosaceus Staphylococcus aureus Streptococcus thermophilus Weissella confusa	20		TXT	Rekin's Janky	Oct 20, 2009