GEO Browser - GEO

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139 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		TBI
GSE233198	Differential programs of melanocyte cell states	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Danio rerio Homo sapiens Mus musculus	20	BED BW MTX NARROWPEAK TBI TSV	Vivek T Natarajan	Jul 05, 2024
GSE123581	Droplet-based combinatorial indexing for massive-scale single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	82	CSV TBI TSV	Caleb Lareau	May 02, 2019
GSE148981	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BW CSV H5 TAB TBI TSV TXT	Remy Bosselut	Nov 25, 2020
GSE162798	Simple oligonucleotide-based multiplexing of single-cell chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	15	BED CSV MTX TBI TSV TXT SRA Run Selector	Anil K Sood	Oct 20, 2021
GSE169431	Transcriptional Activation of Regenerative Haematopoiesis via Niche Sensing	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus Mus musculus	42	H5 NARROWPEAK TBI TSV	Tomer Itkin	Apr 01, 2024
GSE178988	Transcriptional programs dictating Schwann cell transformation in MPNST [scATACseq]	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	3	CSV H5 TBI TSV SRA Run Selector	Lai Man (Natalie) Wu	Nov 07, 2022
GSE179043	Transcriptional programs dictating Schwann cell transformation in MPNST	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	50	CSV H5 TAR TBI TSV TXT	Lai Man (Natalie) Wu	Nov 07, 2022
GSE213597	ETV6 Represses Inflammatory Response Genes and Regulates HSPC Function During Stress Hematopoiesis in Mice	Genome binding/occupancy profiling by high throughput sequencing Other Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	27	BED BW HIC MTX TBI TSV	Kim Nichols	Aug 24, 2023
GSE232003	Multiomic Single Cell Evaluation Reveals Inflammatory Cytokines Affect Innate Lymphoid Cell Fate After Allogeneic Stem Cell Transplantation	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	38	BED BW CSV H5 NARROWPEAK TBI TSV	SONIA LAURIE	Sep 14, 2023
GSE232490	A multiscale 3D chromatin architecture that controls development of the humoral immune system is assembled by IKAROS	Other Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	120	BEDGRAPH BW HIC TBI	Katia Georgopoulos	Nov 20, 2023
GSE234576	Characterizing control of memory CD8 T cell differentiation by BTB-ZF transcription factor Zbtb20 using single cell RNA-sequencing	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	16	BW CSV H5 NARROWPEAK TBI TSV	Edward Usherwood	Jun 30, 2023
GSE237990	ARID1A Orchestrates SWI/SNF-mediated Sequential Binding of Transcription Factors with ARID1A Loss Driving Pre-memory B Cell Fate and Lymphomagenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	172	BED NARROWPEAK TBI TSV	Christopher Russell Chin	Feb 02, 2024
GSE245957	txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility	Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	2	RDS TBI TSV TXT	Ryan Mulqueen Mulqueen	Oct 20, 2023
GSE250219	Direct mapping of G-quadruplex anchored 3D chromatin structure via ViCAR	Other	Homo sapiens Mus musculus	79	BED BW TBI XLSX	Somdutta Dhir	Aug 12, 2024
GSE252111	Mouse kidneys with ischemia-reperfusion injury; Human kidneys with acute kidney injury; RELA binding sites in primary human proximal tubular cells	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing Other	Homo sapiens Mus musculus	31	BW H5 TBI TSV	Yoshiharu Muto	Jul 30, 2024
GSE253600	ROR2 regulates cellular plasticity in pancreatic neoplasia and adenocarcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	48	BED CSV TBI TSV	Simone Benitz	Jun 17, 2024
GSE254908	Smarca4 (Brg1) is a haploinsufficient B-cell tumor suppressor that fine-tunes centrocyte cell fate decisions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	176	BW H5 TBI TSV	Michael Green	Feb 05, 2024
GSE123576	High-throughput combinatorial indexing enables scalable single-cell chromatin accessibility profiling [mouse brain]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED CSV TBI TSV XLSX SRA Run Selector	Caleb Lareau	May 02, 2019
GSE141825	Single-cell ATAC-seq of mouse thymus iNKT cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BED CSV H5 MTX TBI TSV SRA Run Selector	Indra Adrianto	Jun 27, 2023
GSE142365	Single cell ATAC-seq of cardiomyocytes from neonatal mouse hearts after injury	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	BED CSV H5 MTX TBI TSV SRA Run Selector	Zhaoning Wang	Mar 18, 2020