GEO Browser - GEO

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130 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Mus musculus		TBI
GSE141825	Single-cell ATAC-seq of mouse thymus iNKT cells	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	5	BED CSV H5 MTX TBI TSV SRA Run Selector	Indra Adrianto	Jun 27, 2023
GSE193238	A primed immune transcriptional programme is activated in oligodendroglia in multiple sclerosis [ATAC-Seq and RNA-Seq]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BEDPE H5 RDS TBI TSV WIG	Eneritz Agirre	Jan 28, 2022
GSE214046	Three-dimensional chromatin re-organization during muscle stem cell aging [scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	TBI TSV	Carlos Andres Aguilar	Feb 02, 2023
GSE214047	Three-dimensional chromatin re-organization during muscle stem cell aging	Other Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	TBI TSV TXT	Carlos Andres Aguilar	Feb 02, 2023
GSE229513	Symmetry breaking in gastruloid development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	17	BIGWIG H5 MTX RDS RTF TBI TSV TXT	Nadim Aizarani	Apr 29, 2023
GSE277390	Oct4 overexpression and suppression of Notch signaling synergistically induce neurogenic competence in mammalian Muller glia.	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	10	H5 TBI TSV	Sherine Awad	Sep 25, 2024
GSE229892	Paired single nucleus RNA and ATAC sequencing on the role of diet and aging in hematopoietic stem and progenitor cells	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	TAR TBI TSV	Marthe Behrends	Apr 21, 2023
GSE253597	ROR2 regulates cellular plasticity in pancreatic neoplasia and adenocarcinoma (snATAC-Seq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	12	BED CSV TBI TSV	Simone Benitz	Jun 17, 2024
GSE253600	ROR2 regulates cellular plasticity in pancreatic neoplasia and adenocarcinoma	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	48	BED CSV TBI TSV	Simone Benitz	Jun 17, 2024
GSE148979	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development (Mouse scATACseq)	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	CSV H5 TBI TSV SRA Run Selector	Remy Bosselut	Nov 25, 2020
GSE148981	An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Homo sapiens Mus musculus	78	BW CSV H5 TAB TBI TSV TXT	Remy Bosselut	Nov 25, 2020
GSE184846	Dependence on Bcl6 and Blimp1 identifies distinct mechanisms driving memory and follicular helper CD4+ T cell differentiation [scATAC-Seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	CSV H5 TBI TSV SRA Run Selector	Remy Bosselut	Nov 14, 2021
GSE184848	Dependence on Bcl6 and Blimp1 identifies distinct mechanisms driving memory and follicular helper CD4+ T cell differentiation	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	14	CSV H5 TBI TSV	Remy Bosselut	Nov 14, 2021
GSE199739	NuRD complex recruitment to Thpok mediates CD4+ T cell lineage differentiation	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	4	BAI CSV H5 TBI TSV	Remy Bosselut	Jun 10, 2022
GSE207572	Zfp281 and Zfp148 control CD4+ T cell thymic development and Th2 functions	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	38	BW CSV H5 JPG JSON PNG TAB TBI TIFF TSV	Remy Bosselut	Nov 10, 2023
GSE227330	The transcription factor Zfp281 serves redundantly with Zfp148 to support CD4+ T cell development and functions [Papain multiome]	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	8	CSV H5 TBI TSV	Remy Bosselut	Nov 13, 2023
GSE174405	A novel lineage of RORγt+ antigen presenting cells instructs microbiota-dependent regulatory T cell differentiation and tolerance during early life	Expression profiling by high throughput sequencing	Mus musculus	515	TBI TSV	Chrysothemis Brown	Sep 06, 2022
GSE205065	A novel lineage of RORγt+ antigen presenting cells instructs microbiota-dependent regulatory T cell differentiation and tolerance during early life [multiome scATAC-seq]	Genome binding/occupancy profiling by high throughput sequencing	Mus musculus	1	TBI TSV	Chrysothemis Brown	Sep 06, 2022
GSE237987	ARID1A Orchestrates SWI/SNF-mediated Sequential Binding of Transcription Factors and Its Deficiency Drives Pre-memory B-cell Fate and Lymphomagenesis [Arid1a_multiome]	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Mus musculus	14	RDS TBI TSV	Christopher Russell Chin	Feb 02, 2024
GSE237990	ARID1A Orchestrates SWI/SNF-mediated Sequential Binding of Transcription Factors with ARID1A Loss Driving Pre-memory B Cell Fate and Lymphomagenesis	Genome binding/occupancy profiling by high throughput sequencing Expression profiling by high throughput sequencing	Homo sapiens Mus musculus	172	BED NARROWPEAK TBI TSV	Christopher Russell Chin	Feb 02, 2024